RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 PDP1Q9P0J1 537 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-202ENST00000394943 OAZ3Q9UMX2 235 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 SLC25A15Q9Y619 301 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 A0A1W2PRG6 482 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 LRRN3E7EW58 273 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 H3BSA7 217 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 SOCS2O14508 198 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 PRODHO43272 600 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 KALRNO60229 2985 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 CRYGSP22914 178 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 EDNRAP25101 427 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 GGT2P36268 569 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 GIPRP48546 466 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 FAM27BQ5VT28 67 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 STAC2Q6ZMT1 411 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 CCDC71Q8IV32 467 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-202ENST00000394943 RPS4Y2Q8TD47 263 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 FAM222BQ8WU58 562 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 NRG4Q8WWG1 115 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 SMPDL3BQ92485 455 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF566Q969W8 418 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 SIGLEC11Q96RL6 698 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 NOSIPQ9Y314 301 aaKnown RBP6.16□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF99A8MXY4 864 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-202ENST00000394943 BCL10O95999 233 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 IGHG1P01857 330 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 THBDP07204 575 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF43P17038 809 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 GPR4P46093 362 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 YAP1P46937 504 aaKnown RBP6.16□□□□□ -1.42
LIMA1-202ENST00000394943 BLVRAP53004 296 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 ISL1P61371 349 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 POU3F1Q03052 451 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-202ENST00000394943 ITGADQ13349 1161 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 SLC36A3Q495N2 470 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 OR7E24Q6IFN5 339 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 C1orf174Q8IYL3 243 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 HSD17B8Q92506 261 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 TXNDC15Q96J42 360 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 MNTQ99583 582 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 PLCXD1Q9NUJ7 323 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 TMEM38BQ9NVV0 291 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 TAS2R16Q9NYV7 291 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 NKX1-2Q9UD57 310 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-202ENST00000394943 KCNN3Q9UGI6 736 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 AURKCQ9UQB9 309 aa6.16□□□□□ -1.42
LIMA1-202ENST00000394943 HMGN1P05114 100 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 IFNGR1P15260 489 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 TUBG1P23258 451 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 OTX1P32242 354 aaPredicted RBP6.15□□□□□ -1.42
LIMA1-202ENST00000394943 CDKN2AP42771 156 aaKnown RBP6.15□□□□□ -1.42
LIMA1-202ENST00000394943 SELENOPP49908 381 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 IST1P53990 364 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 RUNX1T1Q06455 604 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 NPRL3Q12980 569 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 TSPO2Q5TGU0 170 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 SLC37A3Q8NCC5 494 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 STEAP2Q8NFT2 490 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 OR2T33Q8NG76 320 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 MCHR2Q969V1 340 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 APH1AQ96BI3 265 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 SLC29A1Q99808 456 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 TUBG2Q9NRH3 451 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 SLC7A10Q9NS82 523 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 EXOGQ9Y2C4 368 aaKnown RBP6.15□□□□□ -1.42
LIMA1-202ENST00000394943 SLC35F4A4IF30 521 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 OR10H3O60404 316 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 ATP6V1G2O95670 118 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 HIST1H2ABP04908 130 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 TFPIP10646 304 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 ARHGDIAP52565 204 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 TOMM20Q15388 145 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF684Q5T5D7 378 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 PTCHD4Q6ZW05 846 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 HIST3H2AQ7L7L0 130 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 CHMP1BQ7LBR1 199 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF610Q8N9Z0 462 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 HIST1H2ACQ93077 130 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 TMEM185BQ9H7F4 350 aa6.15□□□□□ -1.42
LIMA1-202ENST00000394943 PNRC2Q9NPJ4 139 aaKnown RBP6.15□□□□□ -1.42
LIMA1-202ENST00000394943 DDX28Q9NUL7 540 aaKnown RBP6.15□□□□□ -1.42
LIMA1-202ENST00000394943 GTF3C1Q12789 2109 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 TRAV27A0A087WT01 109 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 IGHV3-15A0A0B4J1V0 119 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 TRGV8A0A0C4DH27 118 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 UPK3AO75631 287 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF14P17017 642 aaPredicted RBP6.15□□□□□ -1.43
LIMA1-202ENST00000394943 DCTDP32321 178 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 ENDOGQ14249 297 aaKnown RBP6.15□□□□□ -1.43
LIMA1-202ENST00000394943 PTGES3Q15185 160 aaKnown RBP6.15□□□□□ -1.43
LIMA1-202ENST00000394943 FGD3Q5JSP0 725 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF691Q5VV52 312 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 SLC27A4Q6P1M0 643 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 AAED1Q7RTV5 226 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 TMEM163Q8TC26 289 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 TFAP2CQ92754 450 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 DCLRE1CQ96SD1 692 aaKnown RBP6.15□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF649Q9BS31 505 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 KATNB1Q9BVA0 655 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 GALNT8Q9NY28 637 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms