RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SPEGQ15772 3267 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 IGHV3-20A0A0C4DH32 117 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 XKRYO14609 159 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 ADAM10O14672 748 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 ADRA2CP18825 462 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 FAM69AQ5T7M9 428 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 METTL21AQ8WXB1 218 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 CCDC74AQ96AQ1 378 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 AMELYQ99218 206 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 SLA2Q9H6Q3 261 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 RABL2AQ9UBK7 228 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 WNT16Q9UBV4 365 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 ING1Q9UK53 422 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 RABL2BQ9UNT1 228 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 PLGP00747 810 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 MAPK3P27361 379 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 DMWDQ09019 674 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 ACKR1Q16570 336 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 NSMAFQ92636 917 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 C7orf50Q9BRJ6 194 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 TRAF4Q9BUZ4 470 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 SLCO1C1Q9NYB5 712 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 OR5V1Q9UGF6 321 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 B9D1Q9UPM9 204 aa18.82■□□□□ 0.6
CCDC88B-203ENST00000359902 VCANP13611 3396 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 ARID1BQ8NFD5 2236 aaPredicted RBP18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 CABIN1Q9Y6J0 2220 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 A8MVM7 634 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 SMLR1H3BR10 107 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 DXOO77932 396 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 CCR6P51684 374 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 RPL27P61353 136 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 SNTB2Q13425 540 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 TNK1Q13470 666 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 DYRK1AQ13627 763 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 SHBQ15464 509 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 C6orf183Q5T699 404 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 C1orf140Q5VVS0 124 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 LRRTM1Q86UE6 522 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 OTOSQ8NHW6 89 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 ZNF519Q8TB69 540 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 SLITRK2Q9H156 845 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 KCNG2Q9UJ96 466 aa18.81■□□□□ 0.6
CCDC88B-203ENST00000359902 PRSS37A4D1T9 235 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 MT-ND4P03905 459 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 GDNFP39905 211 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 RNF4P78317 190 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 FCN2Q15485 313 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 OTPQ5XKR4 325 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 PWWP2BQ6NUJ5 590 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 C16orf47Q6ZP98 133 aaPredicted RBP18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 LINGO2Q7L985 606 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 GRINAQ7Z429 371 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 SERPINA12Q8IW75 414 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 PRSS35Q8N3Z0 413 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 STT3BQ8TCJ2 826 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 TAS2R10Q9NYW0 307 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 COPZ2Q9P299 210 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 FKBP7Q9Y680 259 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 CALCBP10092 127 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 SLC22A10Q63ZE4 541 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 LRRC69Q6ZNQ3 347 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 TMPRSS9Q7Z410 1059 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 OR10AC1Q8NH08 325 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 MRI1Q9BV20 369 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 GTPBP2Q9BX10 602 aaKnown RBP18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 OR11A1Q9GZK7 315 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 TGIF2Q9GZN2 237 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 DUSP15Q9H1R2 295 aaPredicted RBP18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 MED28Q9H204 178 aa18.8■□□□□ 0.6
CCDC88B-203ENST00000359902 TRBV5-7A0A0A0MS05 114 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 PHYHO14832 338 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 WDR45BQ5MNZ6 344 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 FAM205BPQ63HN1 556 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 KANSL1Q7Z3B3 1105 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 ZNF676Q8N7Q3 588 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 RELTQ969Z4 430 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 FOXN4Q96NZ1 517 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 MESP1Q9BRJ9 268 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 TXNIPQ9H3M7 391 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 PLEKHA1Q9HB21 404 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 TMEM212A6NML5 194 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 ZNF593O00488 134 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 PLPP3O14495 311 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 ZNF254O75437 659 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 ZNF432O94892 652 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 INSM1Q01101 510 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 RHBDD2Q6NTF9 364 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 ZNF574Q6ZN55 896 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 OR51A4Q8NGJ6 313 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 LILRB4Q8NHJ6 448 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 SYNPRQ8TBG9 265 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 GCDHQ92947 438 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 DCBLD2Q96PD2 775 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 COMMD4Q9H0A8 199 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 ADAMTS20P59510 1910 aa18.79■□□□□ 0.6
CCDC88B-203ENST00000359902 TRAV8-7A0A075B6U6 113 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 K7ESF4 209 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 HLA-DQA2P01906 255 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 RAF1P04049 648 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms