RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 HSD3B1P14060 373 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 NDUFV1P49821 464 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 MTAPQ13126 283 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 KLF9Q13886 244 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 RFTN2Q52LD8 501 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 KRTCAP3Q53RY4 240 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 XKR6Q5GH73 641 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 SAMD13Q5VXD3 122 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 RNLSQ5VYX0 342 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 GDF6Q6KF10 455 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF620Q6ZNG0 422 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 SCN4BQ8IWT1 228 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 SELENOHQ8IZQ5 122 aaKnown RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 RNF149Q8NC42 400 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 MDGA1Q8NFP4 955 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 TMEM174Q8WUU8 243 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 ASB17Q8WXJ9 295 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 DPF1Q92782 380 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 FBXO32Q969P5 355 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 CIB3Q96Q77 187 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 TBX5Q99593 518 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 RAB33BQ9H082 229 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 CSTL1Q9H114 145 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 MKKSQ9NPJ1 570 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 TM7SF3Q9NS93 570 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 RLIMQ9NVW2 624 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 MSRAQ9UJ68 235 aa5.3□□□□□ -1.56
SCN1A-216ENST00000637968 LSM2Q9Y333 95 aaKnown RBP5.3□□□□□ -1.56
SCN1A-216ENST00000637968 LTBP3Q9NS15 1303 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 OR2W5A6NFC9 320 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 GSTZ1O43708 216 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 PPP1R11O60927 126 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 WDR1O75083 606 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 SCGB1D2O95969 90 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 CCNOP22674 350 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 MMP11P24347 488 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 NTSP30990 170 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 BTCP35070 178 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 THPOP40225 353 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 CEBPDP49716 269 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 MEF2DQ14814 521 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 SLC36A2Q495M3 483 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 SLC22A6Q4U2R8 563 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 TMEM255AQ5JRV8 349 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 MRM1Q6IN84 353 aaKnown RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 STEAP1BQ6NZ63 245 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 TMEM205Q6UW68 189 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 BTNL3Q6UXE8 466 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 TOMM20LQ6UXN7 152 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 CEACAM20Q6UY09 585 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 C15orf39Q6ZRI6 1047 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 GRINAQ7Z429 371 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 ABHD12BQ7Z5M8 362 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 ADCK2Q7Z695 626 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 CLEC10AQ8IUN9 316 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 LFNGQ8NES3 379 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 OR5D18Q8NGL1 313 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 SHDQ96IW2 340 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 DIRC2Q96SL1 478 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 CNN2Q99439 309 aaKnown RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 SF3B5Q9BWJ5 86 aaKnown RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 COLEC11Q9BWP8 271 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 ULBP1Q9BZM6 244 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 SLC25A31Q9H0C2 315 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 DUSP15Q9H1R2 295 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 IKZF5Q9H5V7 419 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 APMAPQ9HDC9 416 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 MARCH5Q9NX47 278 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 STEAP1Q9UHE8 339 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 ENPP4Q9Y6X5 453 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 TMEM269A0A1B0GVZ9 245 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 OGG1O15527 345 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 DOK2O60496 412 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 STK16O75716 305 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 TRGC2P03986 189 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 CTSSP25774 331 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 SELENOTP62341 195 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 FAM189BP81408 668 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 GAS6Q14393 721 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 RAB6CQ53S08 254 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 XKR7Q5GH72 579 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 EXOSC6Q5RKV6 272 aaKnown RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 LCTLQ6UWM7 567 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 PRICKLE2Q7Z3G6 844 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 VSIG10LQ86VR7 867 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 VRK2Q86Y07 508 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 IQCF1Q8N6M8 205 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 OR11G2Q8NGC1 345 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 OR13C5Q8NGS8 318 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 PPP1R1CQ8WVI7 109 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 DNAJB3Q8WWF6 145 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 TFGQ92734 400 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 BCL2L2Q92843 193 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 SLC35E1Q96K37 410 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 APOLD1Q96LR9 279 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 SPON2Q9BUD6 331 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 GPR62Q9BZJ7 368 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 RAB6CQ9H0N0 254 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 TAF9BQ9HBM6 251 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 POPDC3Q9HBV1 291 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms