RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 NEIL3Q8TAT5 605 aa4.34□□□□□ -1.71
LINC00550-201ENST00000629293 RNASE6Q93091 150 aaKnown RBP4.34□□□□□ -1.71
LINC00550-201ENST00000629293 SPACA9Q96E40 222 aaPredicted RBP4.34□□□□□ -1.71
LINC00550-201ENST00000629293 COL21A1Q96P44 957 aa4.34□□□□□ -1.71
LINC00550-201ENST00000629293 CDCA4Q9BXL8 241 aa4.34□□□□□ -1.71
LINC00550-201ENST00000629293 SERHL2Q9H4I8 314 aa4.34□□□□□ -1.71
LINC00550-201ENST00000629293 ZNF703Q9H7S9 590 aaPredicted RBP4.34□□□□□ -1.71
LINC00550-201ENST00000629293 MIEF1Q9NQG6 463 aa4.34□□□□□ -1.71
LINC00550-201ENST00000629293 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.34□□□□□ -1.71
LINC00550-201ENST00000629293 ENOPH1Q9UHY7 261 aa4.34□□□□□ -1.71
LINC00550-201ENST00000629293 ADAM29Q9UKF5 820 aa4.34□□□□□ -1.71
LINC00550-201ENST00000629293 CLDN16Q9Y5I7 305 aa4.34□□□□□ -1.71
LINC00550-201ENST00000629293 MGAM2Q2M2H8 2515 aa4.34□□□□□ -1.71
LINC00550-201ENST00000629293 A0A0A6YYD5 115 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 SH3D21A4FU49 640 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 EFCAB9A8MZ26 197 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 BOLA2-SMG1P6H3BVE0 249 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 TMPRSS11DO60235 418 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 GLSO94925 669 aaPredicted RBP4.34□□□□□ -1.72
LINC00550-201ENST00000629293 CCNB2O95067 398 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 MFN2O95140 757 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 GADD45GO95257 159 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 PTHP01270 115 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 IGHG3P01860 377 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 SMIM10L1P0DMW3 83 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 PIPP12273 146 aaPredicted RBP4.34□□□□□ -1.72
LINC00550-201ENST00000629293 DDX5P17844 614 aaKnown RBP4.34□□□□□ -1.72
LINC00550-201ENST00000629293 CHMP24386 653 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 GRK5P34947 590 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 SOAT1P35610 550 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 TGFBR1P36897 503 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 MAPK12P53778 367 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 LSM3P62310 102 aaKnown RBP4.34□□□□□ -1.72
LINC00550-201ENST00000629293 TUBA1BP68363 451 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 ITGADQ13349 1161 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 TIGD6Q17RP2 521 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 Q5PR19 223 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 ZNF793Q6ZN11 406 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 DGAT2L6Q6ZPD8 337 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 SEM1Q6ZVN7 128 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 TUBA1AQ71U36 451 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 UBQLNLQ8IYU4 475 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 CIARTQ8N365 385 aaPredicted RBP4.34□□□□□ -1.72
LINC00550-201ENST00000629293 STPG3Q8N7X2 389 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 AQP11Q8NBQ7 271 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 MORN4Q8NDC4 146 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 IL17RDQ8NFM7 739 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 OR52J3Q8NH60 311 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 SLC38A5Q8WUX1 472 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 SMIM10Q96HG1 83 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 NEURL2Q9BR09 285 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 DSN1Q9H410 356 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 DDX31Q9H8H2 851 aaKnown RBP4.34□□□□□ -1.72
LINC00550-201ENST00000629293 UBTD1Q9HAC8 227 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 NMNAT1Q9HAN9 279 aaPredicted RBP4.34□□□□□ -1.72
LINC00550-201ENST00000629293 ACSS1Q9NUB1 689 aaPredicted RBP4.34□□□□□ -1.72
LINC00550-201ENST00000629293 MRPS18AQ9NVS2 196 aaKnown RBP4.34□□□□□ -1.72
LINC00550-201ENST00000629293 TAS2R7Q9NYW3 318 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 AHSPQ9NZD4 102 aa4.34□□□□□ -1.72
LINC00550-201ENST00000629293 CNOT2Q9NZN8 540 aaKnown RBP4.34□□□□□ -1.72
LINC00550-201ENST00000629293 CCDC59Q9P031 241 aaKnown RBP4.34□□□□□ -1.72
LINC00550-201ENST00000629293 RPH3AQ9Y2J0 694 aaPredicted RBP4.34□□□□□ -1.72
LINC00550-201ENST00000629293 F5H0A9 414 aaPredicted RBP4.33□□□□□ -1.72
LINC00550-201ENST00000629293 HMGN4O00479 90 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 KPNA4O00629 521 aaPredicted RBP4.33□□□□□ -1.72
LINC00550-201ENST00000629293 LY6G6DO95868 133 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 ADAP00813 363 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 IFNW1P05000 195 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 HNRNPCP07910 306 aaKnown RBP eCLIP4.33□□□□□ -1.72
LINC00550-201ENST00000629293 PORP16435 677 aaPredicted RBP4.33□□□□□ -1.72
LINC00550-201ENST00000629293 HIST1H1TP22492 207 aaPredicted RBP4.33□□□□□ -1.72
LINC00550-201ENST00000629293 GADD45AP24522 165 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 ATP5A1P25705 553 aaKnown RBP4.33□□□□□ -1.72
LINC00550-201ENST00000629293 SSTR4P31391 388 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 GSSP48637 474 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 ZNF136P52737 540 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 NRG3P56975 720 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 RPS3AP61247 264 aaKnown RBP4.33□□□□□ -1.72
LINC00550-201ENST00000629293 TRA2BP62995 288 aaKnown RBP4.33□□□□□ -1.72
LINC00550-201ENST00000629293 SLAMF1Q13291 335 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 SERTAD2Q14140 314 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 DOC2BQ14184 412 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 PTGES3Q15185 160 aaKnown RBP4.33□□□□□ -1.72
LINC00550-201ENST00000629293 ACSF3Q4G176 576 aaPredicted RBP4.33□□□□□ -1.72
LINC00550-201ENST00000629293 OR5M10Q6IEU7 315 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 ZNF367Q7RTV3 350 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 PAGE2Q7Z2X7 111 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 KRT77Q7Z794 578 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 EGFL6Q8IUX8 553 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 CNEP1R1Q8N9A8 125 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 ZNF675Q8TD23 568 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 FAM222BQ8WU58 562 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 NEIL1Q96FI4 390 aaPredicted RBP4.33□□□□□ -1.72
LINC00550-201ENST00000629293 TMEM19Q96HH6 336 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 TIMP4Q99727 224 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 PIGQQ9BRB3 760 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 RBM24Q9BX46 236 aaKnown RBP4.33□□□□□ -1.72
LINC00550-201ENST00000629293 DCSTAMPQ9H295 470 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 PRDM13Q9H4Q3 707 aa4.33□□□□□ -1.72
LINC00550-201ENST00000629293 METTL7AQ9H8H3 244 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms