RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	VENTX	O95231	258 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	BCHE	P06276	602 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	CELA3B	P08861	270 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	NUDT7	P0C024	238 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	IFNGR1	P15260	489 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	CBR1	P16152	277 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	NUDT2	P50583	147 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	ROR2	Q01974	943 aa	Known RBP	11.72	□□□□□ -0.53
SS18-222	ENST00000582792	BNIP2	Q12982	314 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	SCARB2	Q14108	478 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	CYP51A1	Q16850	503 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	DEF8	Q6ZN54	512 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	TRPM8	Q7Z2W7	1104 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	EPHX4	Q8IUS5	362 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	SLC15A3	Q8IY34	581 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	C10orf111	Q8N326	155 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	ANKK1	Q8NFD2	765 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	11.72	□□□□□ -0.53
SS18-222	ENST00000582792	SEMA6D	Q8NFY4	1073 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	OR10A6	Q8NH74	314 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	SLC35B4	Q969S0	331 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	SPATA5L1	Q9BVQ7	753 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	OCEL1	Q9H607	264 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	EVA1A	Q9H8M9	152 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	CACYBP	Q9HB71	228 aa	Known RBP	11.72	□□□□□ -0.53
SS18-222	ENST00000582792	DYNLRB1	Q9NP97	96 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	RLIM	Q9NVW2	624 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	ABCD2	Q9UBJ2	740 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	ANGPT4	Q9Y264	503 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	RASD1	Q9Y272	281 aa		11.72	□□□□□ -0.53
SS18-222	ENST00000582792	MGAM2	Q2M2H8	2515 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	DYSF	O75923	2080 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	IGHV2OR16-5	A0A0B4J2B6	119 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	SH3PXD2B	A1X283	911 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	CDHR4	A6H8M9	788 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	FAM220BP	B1ANY3	271 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	TMEM229A	B2RXF0	380 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792		B4DSR2	109 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	RPL36A-HNRNPH2	H7BZ11	118 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	NPIPB7	O75200	414 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	GKN3P	P0CG01	181 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	CALB2	P22676	271 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	PCGF2	P35227	344 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	ACAA2	P42765	397 aa	Known RBP	11.71	□□□□□ -0.53
SS18-222	ENST00000582792	PCBP3	P57721	371 aa	Known RBP	11.71	□□□□□ -0.53
SS18-222	ENST00000582792	PSME3	P61289	254 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	POU3F1	Q03052	451 aa	Predicted RBP	11.71	□□□□□ -0.53
SS18-222	ENST00000582792	CCNI	Q14094	377 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	VMAC	Q2NL98	169 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	SPATS1	Q496A3	300 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	LIN52	Q52LA3	116 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	RABL3	Q5HYI8	236 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	INTS11	Q5TA45	600 aa	Known RBP	11.71	□□□□□ -0.53
SS18-222	ENST00000582792	RNF220	Q5VTB9	566 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	C1orf140	Q5VVS0	124 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	WBP2NL	Q6ICG8	309 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	CCDC80	Q76M96	950 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	GLCCI1	Q86VQ1	547 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	KRT73	Q86Y46	540 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	CDK20	Q8IZL9	346 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	NFKBID	Q8NI38	313 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	ZNF583	Q96ND8	569 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	ZNF607	Q96SK3	696 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	ARMC7	Q9H6L4	198 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	CMTM6	Q9NX76	183 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	ZNF232	Q9UNY5	417 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	RCE1	Q9Y256	329 aa		11.71	□□□□□ -0.53
SS18-222	ENST00000582792	PRORSD1P	A6NEY8	169 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	LYNX1	G3V0Z9	82 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	SERPINB7	O75635	380 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	ADRA2A	P08913	450 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	LYNX1	P0DP58	116 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	ARR3	P36575	388 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	COMP	P49747	757 aa	Predicted RBP	11.7	□□□□□ -0.54
SS18-222	ENST00000582792	COPZ1	P61923	177 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	ARF1	P84077	181 aa	Known RBP	11.7	□□□□□ -0.54
SS18-222	ENST00000582792	IL1RL1	Q01638	556 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	NPRL3	Q12980	569 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	LARS2	Q15031	903 aa	Known RBP	11.7	□□□□□ -0.54
SS18-222	ENST00000582792	DHRS4L2	Q6PKH6	230 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	C16orf89	Q6UX73	402 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	ZNF836	Q6ZNA1	936 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	PATL1	Q86TB9	770 aa	Known RBP	11.7	□□□□□ -0.54
SS18-222	ENST00000582792	PGAM4	Q8N0Y7	254 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	CADM2	Q8N3J6	435 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	IL17RD	Q8NFM7	739 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	OR52P1P	Q8NH57	321 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	MAL2	Q969L2	176 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	TPK1	Q9H3S4	243 aa		11.7	□□□□□ -0.54
SS18-222	ENST00000582792	METTL17	Q9H7H0	456 aa	Predicted RBP	11.7	□□□□□ -0.54
SS18-222	ENST00000582792	ZNF503-AS2	A6NEH8	195 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	FTCDNL1	E5RQL4	147 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	ZNF432	O94892	652 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	PNMT	P11086	282 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	PRKAR1B	P31321	381 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	SLC7A2	P52569	658 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	CLDN17	P56750	224 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	SNTB2	Q13425	540 aa	Known RBP	11.69	□□□□□ -0.54
SS18-222	ENST00000582792	DAG1	Q14118	895 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	VRK2	Q86Y07	508 aa		11.69	□□□□□ -0.54

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