RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 IER3IP1Q9Y5U9 82 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 CIB4A0PJX0 185 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 TUBAL3A6NHL2 446 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 KRT33AO76009 404 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 ADRB1P08588 477 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 SP9P0CG40 484 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 ATF4P18848 351 aaPredicted RBP12.08□□□□□ -0.48
VPS4A-204ENST00000566354 SHBQ15464 509 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF124Q15973 351 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 AANATQ16613 207 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 ULK3Q6PHR2 472 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 FIGLAQ6QHK4 219 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 SLC25A45Q8N413 288 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF614Q8N883 585 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 OR52I2Q8NH67 350 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 CEP76Q8TAP6 659 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 FCAMRQ8WWV6 532 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 CTHRC1Q96CG8 243 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 CCDC120Q96HB5 630 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 ZC3H10Q96K80 434 aaKnown RBP12.08□□□□□ -0.48
VPS4A-204ENST00000566354 ELF4Q99607 663 aaPredicted RBP12.08□□□□□ -0.48
VPS4A-204ENST00000566354 MRI1Q9BV20 369 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 PILRAQ9UKJ1 303 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 ENTPD2Q9Y5L3 495 aa12.08□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF98A6NK75 572 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 CYR61O00622 381 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 TOXO94900 526 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 WDPCPO95876 746 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF250P15622 560 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 DPP4P27487 766 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 VEGFCP49767 419 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 MRPS10P82664 201 aaKnown RBP12.07□□□□□ -0.48
VPS4A-204ENST00000566354 MFSD13AQ14CX5 517 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 SLC35D3Q5M8T2 416 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 HES5Q5TA89 166 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 FCRL6Q6DN72 434 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 OR7E24Q6IFN5 339 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 SPICQ8N5J4 248 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 S100A16Q96FQ6 103 aaKnown RBP12.07□□□□□ -0.48
VPS4A-204ENST00000566354 RBCK1Q9BYM8 510 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 OR10A4Q9H209 315 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 EVA1BQ9NVM1 165 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 DNAJB12Q9NXW2 375 aaKnown RBP12.07□□□□□ -0.48
VPS4A-204ENST00000566354 MRPL15Q9P015 296 aaKnown RBP12.07□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF281Q9Y2X9 895 aa12.07□□□□□ -0.48
VPS4A-204ENST00000566354 PATE3B3GLJ2 98 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 PIN1P1O15428 100 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 CFDP00746 253 aaPredicted RBP12.06□□□□□ -0.48
VPS4A-204ENST00000566354 CFIP05156 583 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 GUSBP08236 651 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 CT62P0C5K7 136 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 CPN1P15169 458 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 TSPAN5P62079 268 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 PPP1CAP62136 330 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 DPY19L2P2Q6ZN68 376 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 Q6ZTK2 550 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 STX12Q86Y82 276 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 ZBTB44Q8NCP5 570 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 TMEM52Q8NDY8 209 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 RPS4Y2Q8TD47 263 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 HOXB13Q92826 284 aaPredicted RBP12.06□□□□□ -0.48
VPS4A-204ENST00000566354 RERGQ96A58 199 aaPredicted RBP12.06□□□□□ -0.48
VPS4A-204ENST00000566354 SLC25A38Q96DW6 304 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 GFI1Q99684 422 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 ZFYVE21Q9BQ24 234 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 ANKRD10Q9NXR5 420 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 SUSD2Q9UGT4 822 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 FBXL3Q9UKT7 428 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 POMT2Q9UKY4 750 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 V9GY05 133 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 SCN2AQ99250 2005 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 PCDH15Q96QU1 1955 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 A0A1W2PPL8 197 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 PCP4L1A6NKN8 68 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 MCIDASD6RGH6 385 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 RAB40ALP0C0E4 278 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 GIMD1P0DJR0 217 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 SDHBP21912 280 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 PSMB10P40306 273 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 EMDP50402 254 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 TMEM255AQ5JRV8 349 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 TCTE1Q5JU00 501 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.06□□□□□ -0.48
VPS4A-204ENST00000566354 APOOLQ6UXV4 268 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 GLDNQ6ZMI3 551 aaPredicted RBP12.06□□□□□ -0.48
VPS4A-204ENST00000566354 FCRLAQ7L513 359 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF550Q7Z398 422 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 ADGRG3Q86Y34 549 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF433Q8N7K0 673 aaPredicted RBP12.06□□□□□ -0.48
VPS4A-204ENST00000566354 NPEPL1Q8NDH3 523 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 OR2T4Q8NH00 348 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 C15orf40Q8WUR7 153 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 RAB40AQ8WXH6 277 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 RSC1A1Q92681 617 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 SGTBQ96EQ0 304 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 TWSG1Q9GZX9 223 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 CCDC86Q9H6F5 360 aaKnown RBP12.06□□□□□ -0.48
VPS4A-204ENST00000566354 NOX3Q9HBY0 568 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 MKKSQ9NPJ1 570 aaPredicted RBP12.06□□□□□ -0.48
VPS4A-204ENST00000566354 HRASLS2Q9NWW9 162 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms