RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ZNF14P17017 642 aaPredicted RBP14.77□□□□□ -0.04
CLN3-216ENST00000565316 HNF1AP20823 631 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 CHN2P52757 468 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 PCBP3P57721 371 aaKnown RBP14.77□□□□□ -0.04
CLN3-216ENST00000565316 PUDPQ08623 228 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 PMS2P3Q13401 168 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 SNTB2Q13425 540 aaKnown RBP14.77□□□□□ -0.04
CLN3-216ENST00000565316 RIN1Q13671 783 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 MSMPQ1L6U9 139 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 CARD17Q5XLA6 110 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 IL17RELQ6ZVW7 336 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 ARMC8Q8IUR7 673 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 C1orf159Q96HA4 380 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 CPPED1Q9BRF8 314 aaPredicted RBP14.77□□□□□ -0.04
CLN3-216ENST00000565316 B3GAT2Q9NPZ5 323 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 MED29Q9NX70 200 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 ZNF224Q9NZL3 707 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 CMAHPQ9Y471 501 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 LRP5LA4QPB2 252 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 EVPLLA8MZ36 301 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 MT-ATP6P00846 226 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 ADRA2AP08913 450 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 AQP1P29972 269 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 AQP5P55064 265 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 GSG1Q2KHT4 349 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 AGKQ53H12 422 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 RUNDC3AQ59EK9 446 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 KRT80Q6KB66 452 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 ZNF813Q6ZN06 617 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 RANBP3LQ86VV4 465 aaPredicted RBP14.76□□□□□ -0.05
CLN3-216ENST00000565316 SNX32Q86XE0 403 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 LRRC8CQ8TDW0 803 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 UBASH3BQ8TF42 649 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 MRPL24Q96A35 216 aaKnown RBP14.76□□□□□ -0.05
CLN3-216ENST00000565316 MS4A3Q96HJ5 214 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.76□□□□□ -0.05
CLN3-216ENST00000565316 SLC13A4Q9UKG4 626 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 POFUT2Q9Y2G5 429 aa14.76□□□□□ -0.05
CLN3-216ENST00000565316 LRRN3E7EW58 273 aa14.75□□□□□ -0.05
CLN3-216ENST00000565316 CD79AP11912 226 aa14.75□□□□□ -0.05
CLN3-216ENST00000565316 IL2RGP31785 369 aa14.75□□□□□ -0.05
CLN3-216ENST00000565316 GLRXP35754 106 aa14.75□□□□□ -0.05
CLN3-216ENST00000565316 CAMK2DQ13557 499 aa14.75□□□□□ -0.05
CLN3-216ENST00000565316 SQLEQ14534 574 aa14.75□□□□□ -0.05
CLN3-216ENST00000565316 CR1LQ2VPA4 569 aa14.75□□□□□ -0.05
CLN3-216ENST00000565316 ZNF613Q6PF04 617 aa14.75□□□□□ -0.05
CLN3-216ENST00000565316 PTOV1Q86YD1 416 aa14.75□□□□□ -0.05
CLN3-216ENST00000565316 RNF217Q8TC41 542 aa14.75□□□□□ -0.05
CLN3-216ENST00000565316 ARHGDIGQ99819 225 aa14.75□□□□□ -0.05
CLN3-216ENST00000565316 MRPL37Q9BZE1 423 aaKnown RBP14.75□□□□□ -0.05
CLN3-216ENST00000565316 ULBP2Q9BZM5 246 aa14.75□□□□□ -0.05
CLN3-216ENST00000565316 DYNLRB1Q9NP97 96 aa14.75□□□□□ -0.05
CLN3-216ENST00000565316 ANGPT4Q9Y264 503 aa14.75□□□□□ -0.05
CLN3-216ENST00000565316 SH3PXD2BA1X283 911 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 ZNF726A6NNF4 738 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 SYNGR3O43761 229 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 LYPD3O95274 346 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 C8BP07358 591 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 B4GALT1P15291 398 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 PIGFQ07326 219 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 RBBP4Q09028 425 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 NPTX1Q15818 432 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 FXNQ16595 210 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 DPP10Q8N608 796 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 SMYD1Q8NB12 490 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 C11orf65Q8NCR3 313 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 OR6N1Q8NGY5 312 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 OR5J2Q8NH18 312 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 STON2Q8WXE9 905 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 MCHR1Q99705 422 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 FOXB1Q99853 325 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 C19orf24Q9BVV8 132 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 FBXL3Q9UKT7 428 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 SPEF1Q9Y4P9 236 aa14.74□□□□□ -0.05
CLN3-216ENST00000565316 M0R3H8 397 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 CHP2O43745 196 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 APEX1P27695 318 aaKnown RBP14.73□□□□□ -0.05
CLN3-216ENST00000565316 GIPRP48546 466 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 CSNK1A1P48729 337 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 RAB1AP62820 205 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 ZP4Q12836 540 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 DUSP7Q16829 419 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 TRMT5Q32P41 509 aaKnown RBP14.73□□□□□ -0.05
CLN3-216ENST00000565316 PIWIL3Q7Z3Z3 882 aaKnown RBP14.73□□□□□ -0.05
CLN3-216ENST00000565316 C10orf53Q8N6V4 93 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 LINC01356Q8N9X3 169 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 GPR32P1Q8NGA4 272 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 OR6X1Q8NH79 312 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 TMEM54Q969K7 222 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 SNX18Q96RF0 628 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 RABEP2Q9H5N1 569 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 REV1Q9UBZ9 1251 aa14.73□□□□□ -0.05
CLN3-216ENST00000565316 LYNX1G3V0Z9 82 aa14.72□□□□□ -0.05
CLN3-216ENST00000565316 M0QX08 132 aa14.72□□□□□ -0.05
CLN3-216ENST00000565316 UBL3O95164 117 aa14.72□□□□□ -0.05
CLN3-216ENST00000565316 THY1P04216 161 aa14.72□□□□□ -0.05
CLN3-216ENST00000565316 ADORA3P0DMS8 318 aa14.72□□□□□ -0.05
CLN3-216ENST00000565316 LYNX1P0DP58 116 aa14.72□□□□□ -0.05
CLN3-216ENST00000565316 IFNGR1P15260 489 aa14.72□□□□□ -0.05
CLN3-216ENST00000565316 AHCYP23526 432 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms