RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 NPHS2Q9NP85 383 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 GMEB1Q9Y692 573 aa16.42■□□□□ 0.22
VPS35-202ENST00000561713 SH3PXD2BA1X283 911 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 B9A039 149 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 ANGPT2O15123 496 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 SERPINB7O75635 380 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 CD79AP11912 226 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 ZNF23P17027 643 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 AHCYP23526 432 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 PIGFQ07326 219 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 MFSD13AQ14CX5 517 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 EFNB3Q15768 340 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 DUSP7Q16829 419 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 MSMPQ1L6U9 139 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 SCAIQ8N9R8 606 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 NUP37Q8NFH4 326 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 OR6T1Q8NGN1 323 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 CGREF1Q99674 301 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 ULBP2Q9BZM5 246 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 BPESC1Q9GZL8 116 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 CORINQ9Y5Q5 1042 aa16.41■□□□□ 0.22
VPS35-202ENST00000561713 LRP5LA4QPB2 252 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 PDE5AO76074 875 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 THY1P04216 161 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 PPOXP50336 477 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 NFYCQ13952 458 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 MELKQ14680 651 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 C3orf36Q3SXR2 165 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 ZNF813Q6ZN06 617 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 NET1Q7Z628 596 aaPredicted RBP16.4■□□□□ 0.22
VPS35-202ENST00000561713 ANKK1Q8NFD2 765 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 OR4F15Q8NGB8 312 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 OR6N1Q8NGY5 312 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 CKAP2Q8WWK9 683 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 TAMM41Q96BW9 452 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 ANKRD27Q96NW4 1050 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 TMEM43Q9BTV4 400 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 TPK1Q9H3S4 243 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 ZNF442Q9H7R0 627 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 DYNLRB1Q9NP97 96 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 MRPL39Q9NYK5 338 aaKnown RBP16.4■□□□□ 0.22
VPS35-202ENST00000561713 USP22Q9UPT9 525 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 NDUFAF1Q9Y375 327 aa16.4■□□□□ 0.22
VPS35-202ENST00000561713 LOC102725191A0A1B0GVB3 256 aa16.39■□□□□ 0.21
VPS35-202ENST00000561713 M0QX08 132 aa16.39■□□□□ 0.21
VPS35-202ENST00000561713 PLPP3O14495 311 aa16.39■□□□□ 0.21
VPS35-202ENST00000561713 LYPD3O95274 346 aa16.39■□□□□ 0.21
VPS35-202ENST00000561713 IGFBP1P08833 259 aaPredicted RBP16.39■□□□□ 0.21
VPS35-202ENST00000561713 ADORA3P0DMS8 318 aa16.39■□□□□ 0.21
VPS35-202ENST00000561713 NPR2P20594 1047 aa16.39■□□□□ 0.21
VPS35-202ENST00000561713 CD247P20963 164 aa16.39■□□□□ 0.21
VPS35-202ENST00000561713 ARR3P36575 388 aa16.39■□□□□ 0.21
VPS35-202ENST00000561713 BIDP55957 195 aa16.39■□□□□ 0.21
VPS35-202ENST00000561713 RUNX1T1Q06455 604 aa16.39■□□□□ 0.21
VPS35-202ENST00000561713 SF3A3Q12874 501 aaKnown RBP eCLIP16.39■□□□□ 0.21
VPS35-202ENST00000561713 ENTPD8Q5MY95 495 aa16.39■□□□□ 0.21
VPS35-202ENST00000561713 NHLRC1Q6VVB1 395 aa16.39■□□□□ 0.21
VPS35-202ENST00000561713 FAM169BQ8N8A8 192 aa16.39■□□□□ 0.21
VPS35-202ENST00000561713 MYOZ1Q9NP98 299 aaPredicted RBP16.39■□□□□ 0.21
VPS35-202ENST00000561713 ZNF224Q9NZL3 707 aa16.39■□□□□ 0.21
VPS35-202ENST00000561713 A0A0G2JND7 137 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 TCF21O43680 179 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 CHP2O43745 196 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 CH25HO95992 272 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 HOXB1P14653 301 aaPredicted RBP16.38■□□□□ 0.21
VPS35-202ENST00000561713 IFNGR1P15260 489 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 TNFRSF1BP20333 461 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 PCGF2P35227 344 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 PTDSS1P48651 473 aaKnown RBP16.38■□□□□ 0.21
VPS35-202ENST00000561713 CSNK1A1P48729 337 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 DAG1Q14118 895 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 GSG1Q2KHT4 349 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 SWT1Q5T5J6 900 aaKnown RBP16.38■□□□□ 0.21
VPS35-202ENST00000561713 ZNF613Q6PF04 617 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 RFLNBQ8N5W9 214 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 DPP10Q8N608 796 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 LRRC17Q8N6Y2 441 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 BHLHE22Q8NFJ8 381 aaPredicted RBP16.38■□□□□ 0.21
VPS35-202ENST00000561713 OR5J2Q8NH18 312 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 OR6S1Q8NH40 331 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 MAGEB18Q96M61 343 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 RABEP2Q9H5N1 569 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 B3GAT2Q9NPZ5 323 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 B3GNT2Q9NY97 397 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 SLC7A7Q9UM01 511 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 POFUT2Q9Y2G5 429 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 NOX1Q9Y5S8 564 aa16.38■□□□□ 0.21
VPS35-202ENST00000561713 TMEM129A0AVI4 362 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 ZNF726A6NNF4 738 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 HMGB1P1B2RPK0 211 aaPredicted RBP16.37■□□□□ 0.21
VPS35-202ENST00000561713 LYNX1G3V0Z9 82 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 PATE4P0C8F1 98 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 LYNX1P0DP58 116 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 DAOP14920 347 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 ITGA2P17301 1181 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 IL2RGP31785 369 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 GIPRP48546 466 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 CRYBA2P53672 197 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 ZNF74Q16587 644 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 ZNF540Q8NDQ6 660 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms