RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 NCCRP1Q6ZVX7 275 aaPredicted RBP9.6□□□□□ -0.87
CUX1-217ENST00000558836 DNAAF1Q8NEP3 725 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 OR5M1Q8NGP8 315 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 OR6F1Q8NGZ6 308 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 OR10AC1Q8NH08 325 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 ITPKCQ96DU7 683 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 FYTTD1Q96QD9 318 aaKnown RBP9.6□□□□□ -0.87
CUX1-217ENST00000558836 THAP7Q9BT49 309 aaPredicted RBP9.6□□□□□ -0.87
CUX1-217ENST00000558836 CYSLTR2Q9NS75 346 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 KCNG2Q9UJ96 466 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 LAMP5Q9UJQ1 280 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 EML6Q6ZMW3 1958 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 TEX51A0A1B0GUA7 166 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 H3BML4 177 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 FLRT2O43155 660 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 IDH3BO43837 385 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 MPZL1O95297 269 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 SRMP19623 302 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 MAP2K3P46734 347 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 SLC6A8P48029 635 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 P2RX1P51575 399 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 NR0B2Q15466 257 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 TBRG1Q3YBR2 411 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 HSD17B12Q53GQ0 312 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 ATAD3CQ5T2N8 411 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 PLET1Q6UQ28 207 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 LRRC28Q86X40 367 aaPredicted RBP9.6□□□□□ -0.87
CUX1-217ENST00000558836 TIGD4Q8IY51 512 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 SLC43A2Q8N370 569 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 PLPP5Q8NEB5 264 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 ZNF417Q8TAU3 575 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 ZNF671Q8TAW3 534 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 CHAC2Q8WUX2 184 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 ZNF587Q96SQ5 575 aaPredicted RBP9.6□□□□□ -0.87
CUX1-217ENST00000558836 TMEM185BQ9H7F4 350 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 RNF121Q9H920 327 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 TAS2R10Q9NYW0 307 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 FRRS1LQ9P0K9 344 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 RARRES3Q9UL19 164 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 GTF2A1LQ9UNN4 478 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 NUP210LQ5VU65 1888 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 TRAV36DV7A0A075B6V5 113 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 A0A1B0GTQ1 180 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 MASP2O00187 686 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 TO15178 435 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 SLC16A7O60669 478 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 SLC19A2O60779 497 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 ALOX12BO75342 701 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 GAAP10253 952 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 EMP2P54851 167 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 CD83Q01151 205 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 SLC35D3Q5M8T2 416 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 C1orf140Q5VVS0 124 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 LRRN1Q6UXK5 716 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 MDGA2Q7Z553 956 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 KMT5CQ86Y97 462 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 WDFY1Q8IWB7 410 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 LIPHQ8WWY8 451 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 UPRTQ96BW1 309 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 FRMD6Q96NE9 622 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 GFI1Q99684 422 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 BOLA1Q9Y3E2 137 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 ADAMTS20P59510 1910 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 TMEM200CA6NKL6 621 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 XKRYO14609 159 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 ADAM10O14672 748 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 KRT8P05787 483 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 PTHLHP12272 177 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 ENPP1P22413 925 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 CFL1P23528 166 aaKnown RBP9.59□□□□□ -0.87
CUX1-217ENST00000558836 RCVRNP35243 200 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 PITPNBP48739 271 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 AGFG1P52594 562 aaKnown RBP9.59□□□□□ -0.87
CUX1-217ENST00000558836 DCDP81605 110 aaKnown RBP9.59□□□□□ -0.87
CUX1-217ENST00000558836 C19orf57Q0VDD7 668 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 TRAM1Q15629 374 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 TATDN3Q17R31 274 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 CCDC92Q53HC0 331 aaPredicted RBP9.59□□□□□ -0.87
CUX1-217ENST00000558836 ZNF544Q6NX49 715 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 SLC16A9Q7RTY1 509 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 TPRA1Q86W33 373 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 CARFQ8N187 725 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 GALNT6Q8NCL4 622 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 CAPSLQ8WWF8 208 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 ACOT12Q8WYK0 555 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 KIAA1143Q96AT1 154 aaPredicted RBP9.59□□□□□ -0.87
CUX1-217ENST00000558836 LRFN5Q96NI6 719 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 RANGRFQ9HD47 186 aaPredicted RBP9.59□□□□□ -0.87
CUX1-217ENST00000558836 MRPL15Q9P015 296 aaKnown RBP9.59□□□□□ -0.87
CUX1-217ENST00000558836 ADAM30Q9UKF2 790 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 PILRBQ9UKJ0 227 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 SRPK3Q9UPE1 567 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 PHF3Q92576 2039 aaKnown RBP9.59□□□□□ -0.87
CUX1-217ENST00000558836 EIF4E2O60573 245 aaKnown RBP9.59□□□□□ -0.87
CUX1-217ENST00000558836 UPK3AO75631 287 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 OR6A2O95222 327 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 RENP00797 406 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 CELA2AP08217 269 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 UCHL1P09936 223 aa9.59□□□□□ -0.87
CUX1-217ENST00000558836 PRKAR1AP10644 381 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms