RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 NFKBIZQ9BYH8 718 aa1.15□□□□□ -2.23
PRPF39-208ENST00000554785 COMMD4Q9H0A8 199 aa1.15□□□□□ -2.23
PRPF39-208ENST00000554785 OPN3Q9H1Y3 402 aaPredicted RBP1.15□□□□□ -2.23
PRPF39-208ENST00000554785 COG4Q9H9E3 785 aa1.15□□□□□ -2.23
PRPF39-208ENST00000554785 MRPL40Q9NQ50 206 aaKnown RBP1.15□□□□□ -2.23
PRPF39-208ENST00000554785 MEPEQ9NQ76 525 aaPredicted RBP1.15□□□□□ -2.23
PRPF39-208ENST00000554785 EXOSC3Q9NQT5 275 aaKnown RBP1.15□□□□□ -2.23
PRPF39-208ENST00000554785 COX16Q9P0S2 106 aa1.15□□□□□ -2.23
PRPF39-208ENST00000554785 RSPH14Q9UHP6 348 aa1.15□□□□□ -2.23
PRPF39-208ENST00000554785 ZNF107Q9UII5 783 aaPredicted RBP1.15□□□□□ -2.23
PRPF39-208ENST00000554785 AP4B1Q9Y6B7 739 aa1.15□□□□□ -2.23
PRPF39-208ENST00000554785 U3KQV3 271 aa1.15□□□□□ -2.23
PRPF39-208ENST00000554785 GTF3C1Q12789 2109 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 CHD3Q12873 2000 aaKnown RBP1.14□□□□□ -2.23
PRPF39-208ENST00000554785 ANKRD63C9JTQ0 380 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 K7EPI3 171 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 SLC17A2O00624 439 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 PIRO00625 290 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 PHOX2AO14813 284 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 RAD51BO15315 384 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 RAD1O60671 282 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 RAMP1O60894 148 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 SMPD2O60906 423 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 TBL1XO60907 577 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 OR4F21O95013 312 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 SLC2A10O95528 541 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 ANP32DO95626 131 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 IGHDP01880 384 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 PTMAP06454 111 aaKnown RBP1.14□□□□□ -2.23
PRPF39-208ENST00000554785 CISD3P0C7P0 127 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 SLC35E2P0CK97 266 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 MCF2P10911 925 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 CTSEP14091 401 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 NCF1P14598 390 aaPredicted RBP1.14□□□□□ -2.23
PRPF39-208ENST00000554785 COX6B1P14854 86 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 H2AFXP16104 143 aaPredicted RBP1.14□□□□□ -2.23
PRPF39-208ENST00000554785 POLR2EP19388 210 aaKnown RBP1.14□□□□□ -2.23
PRPF39-208ENST00000554785 CHMLP26374 656 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 CDH5P33151 784 aaPredicted RBP1.14□□□□□ -2.23
PRPF39-208ENST00000554785 ATP5C1P36542 298 aaKnown RBP1.14□□□□□ -2.23
PRPF39-208ENST00000554785 ACVR1BP36896 505 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 DLSTP36957 453 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 MDH1P40925 334 aaKnown RBP1.14□□□□□ -2.23
PRPF39-208ENST00000554785 CSKP41240 450 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 TRPC1P48995 793 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 CASP4P49662 377 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 SLC25A1P53007 311 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 KRTAP12-2P59991 146 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 RPS24P62847 133 aaKnown RBP1.14□□□□□ -2.23
PRPF39-208ENST00000554785 SLC7A9P82251 487 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 PLOD1Q02809 727 aaPredicted RBP1.14□□□□□ -2.23
PRPF39-208ENST00000554785 TLE4Q04727 773 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 ILKQ13418 452 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 CYP51A1Q16850 503 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 DCST2Q5T1A1 773 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 OLFML2AQ68BL7 652 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 SCYL2Q6P3W7 929 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 NIPAL3Q6P499 406 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 AFTPHQ6ULP2 937 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 C2orf66Q6UXQ4 117 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 Q6ZR54 194 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 LRRC70Q7Z2Q7 622 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 ACOT1Q86TX2 421 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 HSCBQ8IWL3 235 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 GPD1LQ8N335 351 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 FDCSPQ8NFU4 85 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 OR2T34Q8NGX1 318 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 CCL4L1Q8NHW4 92 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 SLC2A14Q8TDB8 520 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 KIAA1143Q96AT1 154 aaPredicted RBP1.14□□□□□ -2.23
PRPF39-208ENST00000554785 CCDC127Q96BQ5 260 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 UPRTQ96BW1 309 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 PDXPQ96GD0 296 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 OR5M11Q96RB7 305 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 CCT8L2Q96SF2 557 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 GPA33Q99795 319 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 ULBP3Q9BZM4 244 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 TM6SF2Q9BZW4 377 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 ELOVL4Q9GZR5 314 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 ILKAPQ9H0C8 392 aaPredicted RBP1.14□□□□□ -2.23
PRPF39-208ENST00000554785 SMYD3Q9H7B4 428 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 COQ10BQ9H8M1 238 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 LIN28AQ9H9Z2 209 aaKnown RBP1.14□□□□□ -2.23
PRPF39-208ENST00000554785 RDH8Q9NYR8 311 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 RBAKQ9NYW8 714 aaPredicted RBP1.14□□□□□ -2.23
PRPF39-208ENST00000554785 DPM3Q9P2X0 92 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 GALPQ9UBC7 116 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 ABCD2Q9UBJ2 740 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 GGA2Q9UJY4 613 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 RNF6Q9Y252 685 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 KIF3AQ9Y496 699 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 MFHAS1Q9Y4C4 1052 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 GMPPBQ9Y5P6 360 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 SCN2AQ99250 2005 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 WNK1Q9H4A3 2382 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 DYSFO75923 2080 aa1.14□□□□□ -2.23
PRPF39-208ENST00000554785 IGHV3-35A0A0C4DH35 117 aa1.13□□□□□ -2.23
PRPF39-208ENST00000554785 A0A1W2PQ72 361 aa1.13□□□□□ -2.23
PRPF39-208ENST00000554785 FAM220BPB1ANY3 271 aa1.13□□□□□ -2.23
PRPF39-208ENST00000554785 PRAMEF26H0Y7S4 382 aa1.13□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms