RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ANKRD9Q96BM1 317 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF524Q96C55 264 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 CTHRC1Q96CG8 243 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 ASB16Q96NS5 453 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 DPYSL5Q9BPU6 564 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 APOOQ9BUR5 198 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 FXYD6Q9H0Q3 95 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 RSPH9Q9H1X1 276 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 STARD5Q9NSY2 213 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 PFDN2Q9UHV9 154 aa4.94□□□□□ -1.62
LIMA1-212ENST00000552491 MRM2Q9UI43 246 aaKnown RBP4.94□□□□□ -1.62
LIMA1-212ENST00000552491 OR2W5A6NFC9 320 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 H0Y8X5 98 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 H0YGG7 62 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 SIAH2O43255 324 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 RP2O75695 350 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 ABHD16AO95870 558 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 GPANK1O95872 356 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 RLN2P04090 185 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 MAS1P04201 325 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 HNRNPA1P09651 372 aaKnown RBP eCLIP4.93□□□□□ -1.62
LIMA1-212ENST00000552491 CCL5P13501 91 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 S1PR1P21453 382 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 GJA4P35212 333 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 ART1P52961 327 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 DLX5P56178 289 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 ARF3P61204 181 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-212ENST00000552491 NNATQ16517 81 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 ODF4Q2M2E3 257 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 PCGF3Q3KNV8 242 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 SLC35D3Q5M8T2 416 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 LRFN4Q6PJG9 635 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 FIGLAQ6QHK4 219 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 RD3Q7Z3Z2 195 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 TMPRSS12Q86WS5 348 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 SLC35F3Q8IY50 421 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 EXD3Q8N9H8 876 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 OR2AK2Q8NG84 335 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 OR1E3Q8WZA6 343 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 FAM3CQ92520 227 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 HOXB13Q92826 284 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-212ENST00000552491 DVL3Q92997 716 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-212ENST00000552491 SGTBQ96EQ0 304 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 MYADMQ96S97 322 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 KLHDC3Q9BQ90 382 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 ALG12Q9BV10 488 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 CFHR5Q9BXR6 569 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 SLC17A9Q9BYT1 436 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 ULBP3Q9BZM4 244 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 TRIM2Q9C040 744 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 WDR13Q9H1Z4 485 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 LDAHQ9H6V9 325 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 ZC4H2Q9NQZ6 224 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 POLE3Q9NRF9 147 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 COLEC10Q9Y6Z7 277 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 GON4LQ3T8J9 2241 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 IGKV1D-42A0A075B6H8 117 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 PRSS38A1L453 326 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 URADA6NGE7 173 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 TVP23AA6NH52 213 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 TGFBR3LH3BV60 316 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 H7C1C5 153 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 H7C417 338 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 GOSR2O14653 212 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 DXOO77932 396 aaKnown RBP4.93□□□□□ -1.62
LIMA1-212ENST00000552491 GLCEO94923 617 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 SPDEFO95238 335 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 KAT7O95251 611 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 RLN1P04808 185 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 PPP3CBP16298 524 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 IL32P24001 234 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 AQP2P41181 271 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 PGDP52209 483 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 MAZP56270 477 aaKnown RBP4.93□□□□□ -1.62
LIMA1-212ENST00000552491 LCN6P62502 163 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 LTBQ06643 244 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 DMWDQ09019 674 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 PDGFRLQ15198 375 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 PRRT3Q5FWE3 981 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 NKAIN2Q5VXU1 208 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 ASPHD2Q6ICH7 369 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 TANGO2Q6ICL3 276 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 LEG1Q6P5S2 330 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 GSG1LQ6UXU4 331 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 NPSR1Q6W5P4 371 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 DPY19L2P2Q6ZN68 376 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 HSD17B13Q7Z5P4 300 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-212ENST00000552491 EIF4E3Q8N5X7 224 aaKnown RBP4.93□□□□□ -1.62
LIMA1-212ENST00000552491 OR51S1Q8NGJ8 323 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 OR5M9Q8NGP3 310 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 OR10G6Q8NH81 332 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 OR14C36Q8NHC7 312 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 PATE1Q8WXA2 126 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 MARC2Q969Z3 335 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 TSACCQ96A04 125 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-212ENST00000552491 SLC25A28Q96A46 364 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 MRPS24Q96EL2 167 aaKnown RBP4.93□□□□□ -1.62
LIMA1-212ENST00000552491 SPACA7Q96KW9 195 aa4.93□□□□□ -1.62
LIMA1-212ENST00000552491 TTYH1Q9H313 450 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-212ENST00000552491 SRMSQ9H3Y6 488 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms