RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 GPR68Q15743 365 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 ZNF791Q3KP31 576 aaPredicted RBP7.4□□□□□ -1.23
NEDD8-207ENST00000533242 ATAD3BQ5T9A4 648 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 PRAMEF8Q5VWM4 474 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 PRAMEF7Q5VXH5 474 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 CDC73Q6P1J9 531 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 ZNF620Q6ZNG0 422 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 DGAT2L6Q6ZPD8 337 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 RASSF6Q6ZTQ3 369 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 PLEKHM3Q6ZWE6 761 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 NRARPQ7Z6K4 114 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 SRFBP1Q8NEF9 429 aaKnown RBP7.4□□□□□ -1.23
NEDD8-207ENST00000533242 PFN4Q8NHR9 129 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 GNPDA2Q8TDQ7 276 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 MS4A4EQ96PG1 132 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 SDF2Q99470 211 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 REPIN1Q9BWE0 567 aaKnown RBP7.4□□□□□ -1.23
NEDD8-207ENST00000533242 HCAR1Q9BXC0 346 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 MED20Q9H944 212 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 ABCB9Q9NP78 766 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 ACKR4Q9NPB9 350 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 TIGARQ9NQ88 270 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 HINT3Q9NQE9 182 aaKnown RBP7.4□□□□□ -1.23
NEDD8-207ENST00000533242 MRPS18AQ9NVS2 196 aaKnown RBP7.4□□□□□ -1.23
NEDD8-207ENST00000533242 IL20Q9NYY1 176 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 NTMQ9P121 344 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 ZNF629Q9UEG4 869 aaPredicted RBP7.4□□□□□ -1.23
NEDD8-207ENST00000533242 BOKQ9UMX3 212 aaPredicted RBP7.4□□□□□ -1.23
NEDD8-207ENST00000533242 WDR45Q9Y484 360 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 CLCA3PQ9Y6N3 262 aa7.4□□□□□ -1.23
NEDD8-207ENST00000533242 AKAP6Q13023 2319 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 SNPHO15079 494 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 ARHGEF9O43307 516 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 B3GALT2O43825 422 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 CTNSO60931 367 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 ADAM11O75078 769 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 PTTG1O95997 202 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 IFNA16P05015 189 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 CPMP14384 443 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 MAKP20794 623 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 GSTM3P21266 225 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 ZNF10P21506 573 aaPredicted RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 BMP5P22003 454 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 EEF1A1P68104 462 aaKnown RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 RNF4P78317 190 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 ST3GAL3Q11203 375 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 GNA13Q14344 377 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 ZNF628Q5EBL2 1059 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 FIGNL1Q6PIW4 674 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 POMZP3Q6PJE2 187 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 NAXEQ8NCW5 288 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 IL17RDQ8NFM7 739 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 OR4K14Q8NGD5 310 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 NEIL3Q8TAT5 605 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 PTPMT1Q8WUK0 201 aaPredicted RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 ACOT11Q8WXI4 607 aaPredicted RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 SLC25A46Q96AG3 418 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 MOAP1Q96BY2 351 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 ITPKCQ96DU7 683 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 SAMD8Q96LT4 415 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 TIMP4Q99727 224 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 KATNB1Q9BVA0 655 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 ZNF703Q9H7S9 590 aaPredicted RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 SH2D2AQ9NP31 389 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 FGF20Q9NP95 211 aaPredicted RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 LYARQ9NX58 379 aaKnown RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 SSR3Q9UNL2 185 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 GXYLT2A0PJZ3 443 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 NCR1O76036 304 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 LYPD3O95274 346 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 FPR3P25089 353 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 SLC1A3P43003 542 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 MAGEA8P43361 318 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 ANXA11P50995 505 aaKnown RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 RORCP51449 518 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 ARFIP1P53367 373 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 CDH11P55287 796 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 RAB40BQ12829 278 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 DUSP8Q13202 625 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 C1DQ13901 141 aaKnown RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 SF3B4Q15427 424 aaKnown RBP eCLIP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 TAB1Q15750 504 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 KCNJ8Q15842 424 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 DECR1Q16698 335 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 PGGHGQ32M88 737 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 ACSF3Q4G176 576 aaPredicted RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 MRPL2Q5T653 305 aaKnown RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 SLC22A10Q63ZE4 541 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 THSD4Q6ZMP0 1018 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 CXXC5Q7LFL8 322 aaKnown RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 CXorf67Q86X51 503 aaPredicted RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 OR8H2Q8N162 312 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 LRRC75A-AS1Q8N1F1 130 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 PIGXQ8TBF5 258 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 SMAP2Q8WU79 429 aaPredicted RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 C1GALT1C1Q96EU7 318 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 TXNDC15Q96J42 360 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 CEP19Q96LK0 163 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 SERINC2Q96SA4 455 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 SRRQ9GZT4 340 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms