RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 ZNF730Q6ZMV8 503 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 NRMQ8IXM6 262 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 C20orf196Q8IYI0 205 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 GPR137CQ8N3F9 429 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 OR52N5Q8NH56 324 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 BPIFA2Q96DR5 249 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 DHRS1Q96LJ7 313 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 ADAD1Q96M93 576 aaKnown RBP13.2□□□□□ -0.3
CPSF1-208ENST00000532560 TMEM204Q9BSN7 226 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 ESRP2Q9H6T0 727 aaKnown RBP13.2□□□□□ -0.3
CPSF1-208ENST00000532560 SLC17A5Q9NRA2 495 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 ST6GALNAC2Q9UJ37 374 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 AMDHD2Q9Y303 409 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 V9GYQ6 96 aa13.2□□□□□ -0.3
CPSF1-208ENST00000532560 A0A087WUU8 490 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 MAGEA13PA6NCF6 341 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 ZNF726A6NNF4 738 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 BLOC1S5-TXNDC5H3BN57 136 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 hCG_2039718K7EN88 272 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 IFI30P13284 250 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 IFNGR1P15260 489 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 ATP6V1B2P21281 511 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 BIDP55957 195 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 RPS4XP62701 263 aaKnown RBP13.19□□□□□ -0.3
CPSF1-208ENST00000532560 LSM11P83369 360 aaKnown RBP eCLIP13.19□□□□□ -0.3
CPSF1-208ENST00000532560 PRKCDQ05655 676 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 RPL18Q07020 188 aaKnown RBP13.19□□□□□ -0.3
CPSF1-208ENST00000532560 IQCCQ4KMZ1 466 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 LCN8Q6JVE9 175 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 ALKBH2Q6NS38 261 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 MBOAT2Q6ZWT7 520 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 SLC35D2Q76EJ3 337 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 WDR31Q8NA23 367 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 OR1K1Q8NGR3 316 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 OR6X1Q8NH79 312 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 SLC7A13Q8TCU3 470 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 NRG4Q8WWG1 115 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 TXNDC15Q96J42 360 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 PIP5K1AQ99755 562 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 EMC6Q9BV81 110 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 LIME1Q9H400 295 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 GPR35Q9HC97 309 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 OBP2BQ9NPH6 170 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 NPAP1Q9NZP6 1156 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 SCOCQ9UIL1 159 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 HIF3AQ9Y2N7 669 aa13.19□□□□□ -0.3
CPSF1-208ENST00000532560 MAGED1Q9Y5V3 778 aaPredicted RBP13.19□□□□□ -0.3
CPSF1-208ENST00000532560 CSMD2Q7Z408 3487 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 RAI1Q7Z5J4 1906 aaPredicted RBP13.18□□□□□ -0.3
CPSF1-208ENST00000532560 NPIPB13A6NJU9 1138 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 NPIPB4C9JG80 1138 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 CASQ2O14958 399 aaPredicted RBP13.18□□□□□ -0.3
CPSF1-208ENST00000532560 PDE5AO76074 875 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 RAF1P04049 648 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 FABP3P05413 133 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 CDH2P19022 906 aaPredicted RBP13.18□□□□□ -0.3
CPSF1-208ENST00000532560 MAKP20794 623 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 SLC9A3P48764 834 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 BSPH1Q075Z2 132 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 TRIM25Q14258 630 aaKnown RBP13.18□□□□□ -0.3
CPSF1-208ENST00000532560 ANKDD1AQ495B1 522 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 CARD17Q5XLA6 110 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 KLHL24Q6TFL4 600 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 CYP2R1Q6VVX0 501 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 ZNF704Q6ZNC4 412 aaPredicted RBP13.18□□□□□ -0.3
CPSF1-208ENST00000532560 HDDC2Q7Z4H3 204 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 WDFY1Q8IWB7 410 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 MAGEE2Q8TD90 523 aaPredicted RBP13.18□□□□□ -0.3
CPSF1-208ENST00000532560 BCL2L2Q92843 193 aaPredicted RBP13.18□□□□□ -0.3
CPSF1-208ENST00000532560 ASB9Q96DX5 294 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 NELFAQ9H3P2 528 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 CRLF2Q9HC73 371 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 IL1RAPQ9NPH3 570 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 B3GAT2Q9NPZ5 323 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 POMPQ9Y244 141 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 TMEM5Q9Y2B1 443 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 RNF115Q9Y4L5 304 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 AKAP6Q13023 2319 aa13.18□□□□□ -0.3
CPSF1-208ENST00000532560 ARPC4-TTLL3A0A0A6YYG9 625 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 A0A1W2PR80 420 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 A0A1W2PRG6 482 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 TCRBV5S2A0A599 114 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 DPRXA6NFQ7 191 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 ZNF99A8MXY4 864 aaPredicted RBP13.17□□□□□ -0.3
CPSF1-208ENST00000532560 M0R3G1 203 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 ATE1O95260 518 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 WNT11O96014 354 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 CD3EP07766 207 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 SAGP10523 405 aaPredicted RBP13.17□□□□□ -0.3
CPSF1-208ENST00000532560 DNASE1P24855 282 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 AQP2P41181 271 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 CSNK1A1P48729 337 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 DAP3P51398 398 aaKnown RBP13.17□□□□□ -0.3
CPSF1-208ENST00000532560 SMIM11AP58511 58 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 PRPS1P60891 318 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 CAMK2DQ13557 499 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 CCNIQ14094 377 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 CEACAM16Q2WEN9 425 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 TBRG1Q3YBR2 411 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 HIKESHIQ53FT3 197 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms