RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ASB4Q9Y574 426 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 NUBP2Q9Y5Y2 271 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 FKBP7Q9Y680 259 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 NID2Q14112 1375 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 RALGAPBQ86X10 1494 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 ARHGAP23Q9P227 1491 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 TET3O43151 1660 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 PLCH1Q4KWH8 1693 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 GCC2Q8IWJ2 1684 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 EP400Q96L91 3159 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 YTHDC2Q9H6S0 1430 aaKnown RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 SPHKAPQ2M3C7 1700 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 SPEF2Q9C093 1822 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 TCHHQ07283 1943 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 MED23Q9ULK4 1368 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 HSFX4A0A1B0GTS1 333 aaPredicted RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 HSFX3A0A1B0GWH4 333 aaPredicted RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 A0A1W2PRG6 482 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 SLC5A10A0PJK1 596 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 OR2AT4A6NND4 320 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 A8MUA0 341 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 A8MUI8 341 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 HACD1B0YJ81 288 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 LRRN3E7EW58 273 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 NPIPA2E9PIF3 369 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 LOC110117498-PIK3R3F6TDL0 507 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 ABCD4O14678 606 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 CHMP2AO43633 222 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 LANCL1O43813 399 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 PRKYO43930 277 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 CIB2O75838 187 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 DCTN3O75935 186 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 B3GAT3O94766 335 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 NOL4O94818 638 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 RHOBTB1O94844 696 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 SIX3O95343 332 aaPredicted RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 IFNA4P05014 189 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 PCCAP05165 728 aaPredicted RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 STAG3L2P0CL84 134 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 THRAP10827 490 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 SLC2A1P11166 492 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 MUC1P15941 1255 aaPredicted RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 TEAD1P28347 426 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 YWHABP31946 246 aaKnown RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 EPHX2P34913 555 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 NSFP46459 744 aaKnown RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 NME5P56597 212 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 VSNL1P62760 191 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 TEFQ10587 303 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 SNTB2Q13425 540 aaKnown RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 EIF4EBP2Q13542 120 aaPredicted RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 PTK6Q13882 451 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 CEACAM7Q14002 265 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 FLOT2Q14254 428 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 OXA1LQ15070 435 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 CDK10Q15131 360 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 ANGPT1Q15389 498 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 TOMM34Q15785 309 aaPredicted RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 STX1AQ16623 288 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 KRTAP13-3Q3SY46 172 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 NADK2Q4G0N4 442 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 RFTN2Q52LD8 501 aaPredicted RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 COQ5Q5HYK3 327 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 SPOUT1Q5T280 376 aaKnown RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 LINC00242Q5T6M2 205 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 MARC1Q5VT66 337 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 UBE2UQ5VVX9 321 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 GPR107Q5VW38 600 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 SULT1C3Q6IMI6 304 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 APOBEC3HQ6NTF7 200 aaKnown RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 AFTPHQ6ULP2 937 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 PET117Q6UWS5 81 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 TFAP2EQ6VUC0 442 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 PLEKHG7Q6ZR37 379 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 NUFIP2Q7Z417 695 aaKnown RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 HDDC2Q7Z4H3 204 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 SYVN1Q86TM6 617 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 ZNF589Q86UQ0 364 aaPredicted RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 PLCZ1Q86YW0 608 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 C4orf33Q8N1A6 199 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 SIX6OS1Q8N1H7 587 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 UBE2J2Q8N2K1 259 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 TMEM99Q8N816 258 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 OR9A2Q8NGT5 310 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 OR2L8Q8NGY9 312 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 OR6F1Q8NGZ6 308 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 OR2V1Q8NHB1 315 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 GRPEL2Q8TAA5 225 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 PNPT1Q8TCS8 783 aaKnown RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 C22orf15Q8WYQ4 148 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 AP2M1Q96CW1 435 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 RASD2Q96D21 266 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 C14orf144Q96I85 54 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 RILPQ96NA2 401 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 RAB3IPQ96QF0 476 aaPredicted RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 PRRT1Q99946 306 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 P2RY13Q9BPV8 354 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 C11orf70Q9BRQ4 267 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 TMEM246Q9BRR3 403 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 OSBPL8Q9BZF1 889 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms