RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PFDN5Q99471 154 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 NPAS1Q99742 590 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 TEX12Q9BXU0 123 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 POLR2J3Q9H1A7 115 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 DPAGT1Q9H3H5 408 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 TREM1Q9NP99 234 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 FLRT3Q9NZU0 649 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 LUZP4Q9P127 313 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 PRODH2Q9UF12 536 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 CBLCQ9ULV8 474 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 PTPRQQ9UMZ3 2332 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 SLC22A23A1A5C7 686 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 KHDRBS3O75525 346 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 STX11O75558 287 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 NTN1O95631 604 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 CSN2P05814 226 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 ADRA2AP08913 450 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 ARAFP10398 606 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 LIPCP11150 499 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 NPR2P20594 1047 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 CSRP1P21291 193 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 ARFIP1P53367 373 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 MVDP53602 400 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 NRG3P56975 720 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 DUSP8Q13202 625 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 EIF3IQ13347 325 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 IL10RAQ13651 578 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 DEFB109BQ30KR1 87 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 IFI44LQ53G44 452 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 CRB2Q5IJ48 1285 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 YOD1Q5VVQ6 348 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 KIRREL2Q6UWL6 708 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 RDH10Q8IZV5 341 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 TMEM185AQ8NFB2 350 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 OR52H1Q8NGJ2 320 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 OR4C3Q8NH37 302 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 SMAP2Q8WU79 429 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 TNFAIP8L1Q8WVP5 186 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 SMPDL3BQ92485 455 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 DIO2Q92813 273 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 TMEM43Q9BTV4 400 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 KLHL28Q9NXS3 571 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 ZNF226Q9NYT6 803 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 PLA2G3Q9NZ20 509 aa7.91□□□□□ -1.14
LIMCH1-209ENST00000509277 ANXA2P2A6NMY6 339 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 GPR31O00270 319 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 HCRTR2O43614 444 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 ZNF254O75437 659 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 UMODP07911 640 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 PSG6Q00889 435 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 PIN1Q13526 163 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 VASNQ6EMK4 673 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 SERPINA11Q86U17 422 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 C9orf40Q8IXQ3 194 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 OR2L13Q8N349 312 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 C10orf53Q8N6V4 93 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 OR11G2Q8NGC1 345 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 OR10Z1Q8NGY1 313 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 OR14A16Q8NHC5 309 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 ZNF563Q8TA94 476 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 NR4A3Q92570 626 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 SDF2Q99470 211 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 BCL2L14Q9BZR8 327 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 METTL7AQ9H8H3 244 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 UNKLQ9H9P5 680 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 SEMA5BQ9P283 1151 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 GPR160Q9UJ42 338 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 PRELID3BQ9Y3B1 194 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 ACVR1BP36896 505 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 PSMA6P60900 246 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 CXCR4P61073 352 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 SNRPEP62304 92 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 RNF4P78317 190 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 ETFDHQ16134 617 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 MAPK14Q16539 360 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 NPSR1Q6W5P4 371 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 RBMS3Q6XE24 437 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 KLBQ86Z14 1044 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 LIX1LQ8IVB5 337 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 S100PBPQ96BU1 408 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 PDCD10Q9BUL8 212 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 KATNB1Q9BVA0 655 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 MND1Q9BWT6 205 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 H2AFY2Q9P0M6 372 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 LHX6Q9UPM6 363 aa7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 RPH3AQ9Y2J0 694 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-209ENST00000509277 MEIS3P1A6NDR6 274 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 KLF7O75840 302 aaPredicted RBP7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 DDAH2O95865 285 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 CSTAP01040 98 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 GASTP01350 101 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 APOC1P02654 83 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 MRPL3P09001 348 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 RRASP10301 218 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 LIFP15018 202 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 CHMP24386 653 aa7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 PTBP1P26599 531 aaKnown RBP eCLIP7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 EIF2S3P41091 472 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-209ENST00000509277 VEGFCP49767 419 aa7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms