RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 BIDP55957 195 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 RPS4XP62701 263 aaKnown RBP9.13□□□□□ -0.95
SKA1-204ENST00000488454 GUSBP1Q15486 140 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 RFX4Q33E94 735 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 SLC25A35Q3KQZ1 300 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 NIPAL3Q6P499 406 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 VWA1Q6PCB0 445 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 CD300LDQ6UXZ3 194 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 DPY19L2P2Q6ZN68 376 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 SLC35D2Q76EJ3 337 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 NUFIP2Q7Z417 695 aaKnown RBP9.13□□□□□ -0.95
SKA1-204ENST00000488454 ZIC4Q8N9L1 334 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 OR52L1Q8NGH7 329 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 LILRB4Q8NHJ6 448 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 FANK1Q8TC84 345 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 EME1Q96AY2 570 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 TMEM45BQ96B21 275 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 TXNDC15Q96J42 360 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 ADAD1Q96M93 576 aaKnown RBP9.13□□□□□ -0.95
SKA1-204ENST00000488454 ZNF385AQ96PM9 386 aaKnown RBP9.13□□□□□ -0.95
SKA1-204ENST00000488454 NIPSNAP1Q9BPW8 284 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 RBM4BQ9BQ04 359 aaKnown RBP9.13□□□□□ -0.95
SKA1-204ENST00000488454 C9orf16Q9BUW7 83 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 RBM4Q9BWF3 364 aaKnown RBP9.13□□□□□ -0.95
SKA1-204ENST00000488454 TEX12Q9BXU0 123 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 POLDIP3Q9BY77 421 aaKnown RBP9.13□□□□□ -0.95
SKA1-204ENST00000488454 OR52D1Q9H346 318 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 MCCC2Q9HCC0 563 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 KCNJ16Q9NPI9 418 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 B3GAT1Q9P2W7 334 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 STX18Q9P2W9 335 aaKnown RBP9.13□□□□□ -0.95
SKA1-204ENST00000488454 GRHPRQ9UBQ7 328 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 ENOPH1Q9UHY7 261 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 ING1Q9UK53 422 aaPredicted RBP9.13□□□□□ -0.95
SKA1-204ENST00000488454 OAZ3Q9UMX2 235 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 RCE1Q9Y256 329 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 ORC6Q9Y5N6 252 aa9.13□□□□□ -0.95
SKA1-204ENST00000488454 MAGED1Q9Y5V3 778 aaPredicted RBP9.13□□□□□ -0.95
SKA1-204ENST00000488454 FAM90A27PA6NNH2 459 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 SLC43A1O75387 559 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 CLDN14O95500 239 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 CD14P08571 375 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 CD8BP10966 210 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 OSMP13725 252 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 POU1F1P28069 291 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 NOS3P29474 1203 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 RPL27P61353 136 aaKnown RBP9.12□□□□□ -0.95
SKA1-204ENST00000488454 ERVK-25P63136 954 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 TOP3AQ13472 1001 aaPredicted RBP9.12□□□□□ -0.95
SKA1-204ENST00000488454 ACKR1Q16570 336 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 FAHD1Q6P587 224 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 ZNF620Q6ZNG0 422 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 ZBTB49Q6ZSB9 765 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 BEND4Q6ZU67 534 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 ABHD12BQ7Z5M8 362 aaPredicted RBP9.12□□□□□ -0.95
SKA1-204ENST00000488454 LUZP2Q86TE4 346 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 IGFN1Q86VF2 1251 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 LIX1LQ8IVB5 337 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 CLDN22Q8N7P3 220 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 ZNF610Q8N9Z0 462 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 POMGNT2Q8NAT1 580 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 OR6N1Q8NGY5 312 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 OR6X1Q8NH79 312 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 TEX47Q8TBZ9 253 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 SSC4DQ8WTU2 575 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 ITLN2Q8WWU7 325 aaPredicted RBP9.12□□□□□ -0.95
SKA1-204ENST00000488454 SAMD8Q96LT4 415 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 CIB1Q99828 191 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 EMC6Q9BV81 110 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 KATNB1Q9BVA0 655 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 IFT27Q9BW83 186 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 TXNIPQ9H3M7 391 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 SMURF2Q9HAU4 748 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 B3GAT2Q9NPZ5 323 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 PAPOLBQ9NRJ5 636 aaKnown RBP9.12□□□□□ -0.95
SKA1-204ENST00000488454 KRT84Q9NSB2 600 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 TBC1D23Q9NUY8 699 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 MED29Q9NX70 200 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 IL20RAQ9UHF4 553 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 ZNF346Q9UL40 294 aaKnown RBP9.12□□□□□ -0.95
SKA1-204ENST00000488454 POFUT2Q9Y2G5 429 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 IER3IP1Q9Y5U9 82 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 CDH10Q9Y6N8 788 aa9.12□□□□□ -0.95
SKA1-204ENST00000488454 A6NIZ1 184 aa9.11□□□□□ -0.95
SKA1-204ENST00000488454 NPIPB13A6NJU9 1138 aa9.11□□□□□ -0.95
SKA1-204ENST00000488454 A8MXE2 369 aa9.11□□□□□ -0.95
SKA1-204ENST00000488454 NPIPB4C9JG80 1138 aa9.11□□□□□ -0.95
SKA1-204ENST00000488454 PDLIM1O00151 329 aa9.11□□□□□ -0.95
SKA1-204ENST00000488454 XKRYO14609 159 aa9.11□□□□□ -0.95
SKA1-204ENST00000488454 IMPA2O14732 288 aa9.11□□□□□ -0.95
SKA1-204ENST00000488454 TRAF3IP2O43734 574 aaPredicted RBP9.11□□□□□ -0.95
SKA1-204ENST00000488454 IDH3BO43837 385 aa9.11□□□□□ -0.95
SKA1-204ENST00000488454 CNOT4O95628 575 aaKnown RBP9.11□□□□□ -0.95
SKA1-204ENST00000488454 CGAP01215 116 aa9.11□□□□□ -0.95
SKA1-204ENST00000488454 IGHG1P01857 330 aa9.11□□□□□ -0.95
SKA1-204ENST00000488454 CDH2P19022 906 aaPredicted RBP9.11□□□□□ -0.95
SKA1-204ENST00000488454 IGFBP5P24593 272 aa9.11□□□□□ -0.95
SKA1-204ENST00000488454 ACVR1BP36896 505 aa9.11□□□□□ -0.95
SKA1-204ENST00000488454 OR3A2P47893 321 aa9.11□□□□□ -0.95
SKA1-204ENST00000488454 SELENOPP49908 381 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms