RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 TMEM43Q9BTV4 400 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 ULBP2Q9BZM5 246 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 MRPL39Q9NYK5 338 aaKnown RBP17.09■□□□□ 0.33
COL9A3-210ENST00000472880 POFUT2Q9Y2G5 429 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 SH3PXD2BA1X283 911 aa17.08■□□□□ 0.32
COL9A3-210ENST00000472880 ZNF726A6NNF4 738 aa17.08■□□□□ 0.32
COL9A3-210ENST00000472880 SERPINI2O75830 405 aa17.08■□□□□ 0.32
COL9A3-210ENST00000472880 AHCYP23526 432 aa17.08■□□□□ 0.32
COL9A3-210ENST00000472880 CDH12P55289 794 aa17.08■□□□□ 0.32
COL9A3-210ENST00000472880 ADRM1Q16186 407 aa17.08■□□□□ 0.32
COL9A3-210ENST00000472880 CDK20Q8IZL9 346 aa17.08■□□□□ 0.32
COL9A3-210ENST00000472880 MAGEB18Q96M61 343 aa17.08■□□□□ 0.32
COL9A3-210ENST00000472880 ZNF446Q9NWS9 450 aa17.08■□□□□ 0.32
COL9A3-210ENST00000472880 CMAHPQ9Y471 501 aa17.08■□□□□ 0.32
COL9A3-210ENST00000472880 LRRN3E7EW58 273 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 MFN2O95140 757 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 MT-ATP6P00846 226 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 TGFAP01135 160 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 B4GALT1P15291 398 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 GIFP27352 417 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 THBS2P35442 1172 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 CHN2P52757 468 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 CAMK2DQ13557 499 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 CYP51A1Q16850 503 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 ZCCHC24Q8N2G6 241 aaKnown RBP17.07■□□□□ 0.32
COL9A3-210ENST00000472880 SMYD1Q8NB12 490 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 C11orf65Q8NCR3 313 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 TXNDC15Q96J42 360 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 MCHR1Q99705 422 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 WFDC6Q9BQY6 131 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 RABEP2Q9H5N1 569 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 B3GNT2Q9NY97 397 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 LEF1Q9UJU2 399 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-210ENST00000472880 SPEF1Q9Y4P9 236 aa17.07■□□□□ 0.32
COL9A3-210ENST00000472880 MALRD1Q5VYJ5 2156 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 TMEM129A0AVI4 362 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 LRP5LA4QPB2 252 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 M0R3H8 397 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 PLPP3O14495 311 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 TPST2O60704 377 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 FMO6PO60774 539 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 RAB36O95755 333 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 C8BP07358 591 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 ADRA2AP08913 450 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 NR4A1P22736 598 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 CSNK1A1P48729 337 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 PIGFQ07326 219 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 TRMT5Q32P41 509 aaKnown RBP17.06■□□□□ 0.32
COL9A3-210ENST00000472880 ZNF613Q6PF04 617 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 DLEU7Q6UYE1 221 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 ZNF627Q7L945 461 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 PXKQ7Z7A4 578 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 DHDDSQ86SQ9 333 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 OR5J2Q8NH18 312 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 MS4A3Q96HJ5 214 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 ARHGDIGQ99819 225 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 FOXB1Q99853 325 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 TPK1Q9H3S4 243 aa17.06■□□□□ 0.32
COL9A3-210ENST00000472880 C11orf98E9PRG8 122 aa17.05■□□□□ 0.32
COL9A3-210ENST00000472880 CHP2O43745 196 aa17.05■□□□□ 0.32
COL9A3-210ENST00000472880 OR6A2O95222 327 aa17.05■□□□□ 0.32
COL9A3-210ENST00000472880 OPN1SWP03999 348 aa17.05■□□□□ 0.32
COL9A3-210ENST00000472880 ADORA3P0DMS8 318 aa17.05■□□□□ 0.32
COL9A3-210ENST00000472880 APEX1P27695 318 aaKnown RBP17.05■□□□□ 0.32
COL9A3-210ENST00000472880 PTDSS1P48651 473 aaKnown RBP17.05■□□□□ 0.32
COL9A3-210ENST00000472880 PCBP3P57721 371 aaKnown RBP17.05■□□□□ 0.32
COL9A3-210ENST00000472880 RBBP4Q09028 425 aa17.05■□□□□ 0.32
COL9A3-210ENST00000472880 KRTAP24-1Q3LI83 254 aa17.05■□□□□ 0.32
COL9A3-210ENST00000472880 RUNDC3AQ59EK9 446 aa17.05■□□□□ 0.32
COL9A3-210ENST00000472880 PTOV1Q86YD1 416 aa17.05■□□□□ 0.32
COL9A3-210ENST00000472880 ZNF786Q8N393 782 aa17.05■□□□□ 0.32
COL9A3-210ENST00000472880 UBASH3BQ8TF42 649 aa17.05■□□□□ 0.32
COL9A3-210ENST00000472880 MRPL24Q96A35 216 aaKnown RBP17.05■□□□□ 0.32
COL9A3-210ENST00000472880 FBXL3Q9UKT7 428 aa17.05■□□□□ 0.32
COL9A3-210ENST00000472880 CPSF4LA6NMK7 179 aaKnown RBP17.04■□□□□ 0.32
COL9A3-210ENST00000472880 M0R233 179 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 ANGPT2O15123 496 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 SYNGR3O43761 229 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 UBL3O95164 117 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 TACSTD2P09758 323 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 IFNGR1P15260 489 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 ZNF14P17017 642 aaPredicted RBP17.04■□□□□ 0.32
COL9A3-210ENST00000472880 GIPRP48546 466 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 BIDP55957 195 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 RPS23P62266 143 aaKnown RBP17.04■□□□□ 0.32
COL9A3-210ENST00000472880 GALK2Q01415 458 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 CR1LQ2VPA4 569 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 GKAP1Q5VSY0 366 aaPredicted RBP17.04■□□□□ 0.32
COL9A3-210ENST00000472880 WDFY1Q8IWB7 410 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 HPS1Q92902 700 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 SNX18Q96RF0 628 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 SOX7Q9BT81 388 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 MRPL37Q9BZE1 423 aaKnown RBP17.04■□□□□ 0.32
COL9A3-210ENST00000472880 DENND2DQ9H6A0 471 aaPredicted RBP17.04■□□□□ 0.32
COL9A3-210ENST00000472880 NDUFAF1Q9Y375 327 aa17.04■□□□□ 0.32
COL9A3-210ENST00000472880 IGFBP1P08833 259 aaPredicted RBP17.03■□□□□ 0.32
COL9A3-210ENST00000472880 LSP1P33241 339 aa17.03■□□□□ 0.32
COL9A3-210ENST00000472880 EVX1P49640 407 aa17.03■□□□□ 0.32
COL9A3-210ENST00000472880 MTPNP58546 118 aa17.03■□□□□ 0.32
COL9A3-210ENST00000472880 RAB1AP62820 205 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms