RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	ARPC4-TTLL3	A0A0A6YYG9	625 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	LOC100653049	A0A140TA62	436 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	ZNF503-AS2	A6NEH8	195 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	ZNF726	A6NNF4	738 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	CHP2	O43745	196 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	GPRIN2	O60269	458 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	KRT34	O76011	436 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	OR6A2	O95222	327 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	ADORA3	P0DMS8	318 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	CD79A	P11912	226 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	B4GALT1	P15291	398 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	CD247	P20963	164 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	CALCR	P30988	508 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	BID	P55957	195 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	SNRPD2	P62316	118 aa	Known RBP	7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	NAAA	Q02083	359 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	GUCY1A3	Q02108	690 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	PIGF	Q07326	219 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	KLF10	Q13118	480 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	CYLC2	Q14093	348 aa	Predicted RBP	7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	MELK	Q14680	651 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	MFSD13A	Q14CX5	517 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	VMAC	Q2NL98	169 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	INTS11	Q5TA45	600 aa	Known RBP	7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	NANOGP8	Q6NSW7	305 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	CGB2	Q6NT52	195 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	ZNF613	Q6PF04	617 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	TTC33	Q6PID6	262 aa	Predicted RBP	7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	ZNF813	Q6ZN06	617 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	DEF8	Q6ZN54	512 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	SLC46A3	Q7Z3Q1	461 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	MDP1	Q86V88	176 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	TSPYL5	Q86VY4	417 aa	Predicted RBP	7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	PRIMA1	Q86XR5	153 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	SLC30A8	Q8IWU4	369 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	TMEM123	Q8N131	208 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	LRRC17	Q8N6Y2	441 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	ANKS4B	Q8N8V4	417 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	ADPRHL1	Q8NDY3	354 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	OR5J2	Q8NH18	312 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	ADAMTS16	Q8TE57	1224 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	STON2	Q8WXE9	905 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	PROX1	Q92786	737 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	LRRC58	Q96CX6	371 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	ECSIT	Q9BQ95	431 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	TMEM43	Q9BTV4	400 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	ULBP2	Q9BZM5	246 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	NANOG	Q9H9S0	305 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	OBP2B	Q9NPH6	170 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	CA10	Q9NS85	328 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	MRPL39	Q9NYK5	338 aa	Known RBP	7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	POFUT2	Q9Y2G5	429 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	SH3GLB1	Q9Y371	365 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	CORIN	Q9Y5Q5	1042 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	NOX1	Q9Y5S8	564 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	PMF1-BGLAP	U3KQ54	211 aa		7.54	□□□□□ -1.2
RFX3-209	ENST00000451859	TRAPPC13	A5PLN9	417 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	7.53	□□□□□ -1.2
RFX3-209	ENST00000451859		H7C417	338 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	FXYD1	O00168	92 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	PLPP3	O14495	311 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	RNF13	O43567	381 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	FMO6P	O60774	539 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	FZD7	O75084	574 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	HLA-H	P01893	362 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	THY1	P04216	161 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	IFNGR1	P15260	489 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	SERPINF1	P36955	418 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	OR1E2	P47887	323 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	CSNK1A1	P48729	337 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	GZMM	P51124	257 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	CRYBA2	P53672	197 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	TAS2R41	P59536	307 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	LRRC23	Q53EV4	343 aa	Predicted RBP	7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	METTL21C	Q5VZV1	264 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	KRT80	Q6KB66	452 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	DNM1P46	Q6ZS02	220 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	CARM1	Q86X55	608 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	C20orf196	Q8IYI0	205 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	POU5F2	Q8N7G0	328 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	SCAI	Q8N9R8	606 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	MAGEE2	Q8TD90	523 aa	Predicted RBP	7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	TSPEAR	Q8WU66	669 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	FAM168A	Q92567	244 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	SLC41A3	Q96GZ6	507 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	TPD52L3	Q96J77	140 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	SORCS2	Q96PQ0	1159 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	KATNB1	Q9BVA0	655 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	NOX3	Q9HBY0	568 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	B3GAT2	Q9NPZ5	323 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	SAR1A	Q9NR31	198 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	NANS	Q9NR45	359 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	ZNF446	Q9NWS9	450 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	ARMCX1	Q9P291	453 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	FKBP7	Q9Y680	259 aa		7.53	□□□□□ -1.2
RFX3-209	ENST00000451859	DNHD1	Q96M86	4753 aa		7.52	□□□□□ -1.21
RFX3-209	ENST00000451859	LOC102725191	A0A1B0GVB3	256 aa		7.52	□□□□□ -1.21
RFX3-209	ENST00000451859	SH3PXD2B	A1X283	911 aa		7.52	□□□□□ -1.21
RFX3-209	ENST00000451859	ZNF99	A8MXY4	864 aa	Predicted RBP	7.52	□□□□□ -1.21

Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms