RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ARSGQ96EG1 525 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 DAZAP1Q96EP5 407 aaKnown RBP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 PKP2Q99959 881 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 DMRT3Q9NQL9 472 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 A0A0D9SG52 128 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 SLC22A23A1A5C7 686 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 ERVH48-1M5A8F1 160 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 IGHG1P01857 330 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 ATP5J2P56134 94 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 TGIF1Q15583 401 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 RNASE10Q5GAN6 216 aaKnown RBP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 SLX4IPQ5VYV7 408 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 OR10K2Q6IF99 312 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 RFPL4BQ6ZWI9 263 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 DNAJC22Q8N4W6 341 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 CPPED1Q9BRF8 314 aaPredicted RBP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 APMAPQ9HDC9 416 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 C5AR2Q9P296 337 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 TMEM72A0PK05 275 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 H0Y8G0 127 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF701M0R085 212 aaPredicted RBP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 ALX3O95076 343 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 LIMK1P53667 647 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 CRYZQ08257 329 aaKnown RBP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 PRSS42Q7Z5A4 293 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 MRGPREQ86SM8 312 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF566Q969W8 418 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 RNF170Q96K19 258 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 NKX6-2Q9C056 277 aaPredicted RBP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 NT5DC2Q9H857 520 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 YTHDF2Q9Y5A9 579 aaKnown RBP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 PUS1Q9Y606 427 aaKnown RBP eCLIP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 IGLV3-10A0A075B6K4 115 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 MED6O75586 246 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 SLC35E2P0CK97 266 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 GGT1P19440 569 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 RPS19P39019 145 aaKnown RBP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 NAA10P41227 235 aaPredicted RBP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 FRKP42685 505 aaPredicted RBP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 YIF1BQ5BJH7 314 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 STEAP3Q658P3 488 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 CDHR3Q6ZTQ4 885 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 TMEM151AQ8N4L1 468 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 LRRC57Q8N9N7 239 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 CANT1Q8WVQ1 401 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 C10orf82Q8WW14 230 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 TLCD1Q96CP7 247 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 ABHD17AQ96GS6 310 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 SLC25A44Q96H78 314 aaPredicted RBP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 ZBTB26Q9HCK0 441 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 FAM118AQ9NWS6 357 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 VNN3Q9NY84 501 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 MED16Q9Y2X0 877 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 UBE2J1Q9Y385 318 aaPredicted RBP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 PRSS21Q9Y6M0 314 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 A8MT66 165 aa6.71□□□□□ -1.33
SCN9A-202ENST00000409435 SLCO2B1O94956 709 aa6.71□□□□□ -1.33
SCN9A-202ENST00000409435 CHRM4P08173 479 aa6.71□□□□□ -1.33
SCN9A-202ENST00000409435 MMP7P09237 267 aaPredicted RBP6.71□□□□□ -1.33
SCN9A-202ENST00000409435 AKR1C4P17516 323 aa6.71□□□□□ -1.33
SCN9A-202ENST00000409435 AMY2BP19961 511 aa6.71□□□□□ -1.33
SCN9A-202ENST00000409435 PPT1P50897 306 aa6.71□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF140P52738 457 aaPredicted RBP6.71□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF813Q6ZN06 617 aa6.71□□□□□ -1.33
SCN9A-202ENST00000409435 OR6N2Q8NGY6 317 aa6.71□□□□□ -1.33
SCN9A-202ENST00000409435 ELP5Q8TE02 316 aa6.71□□□□□ -1.33
SCN9A-202ENST00000409435 SLC25A43Q8WUT9 341 aaPredicted RBP6.71□□□□□ -1.33
SCN9A-202ENST00000409435 KCNK17Q96T54 332 aa6.71□□□□□ -1.33
SCN9A-202ENST00000409435 DHRS9Q9BPW9 319 aa6.71□□□□□ -1.33
SCN9A-202ENST00000409435 SYT3Q9BQG1 590 aa6.71□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF768Q9H5H4 540 aaKnown RBP6.71□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF586Q9NXT0 402 aa6.71□□□□□ -1.33
SCN9A-202ENST00000409435 MARCH4Q9P2E8 410 aaPredicted RBP6.71□□□□□ -1.33
SCN9A-202ENST00000409435 EXOGQ9Y2C4 368 aaKnown RBP6.71□□□□□ -1.33
SCN9A-202ENST00000409435 TCAPO15273 167 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 TRAF3IP2O43734 574 aaPredicted RBP6.71□□□□□ -1.34
SCN9A-202ENST00000409435 DIRAS3O95661 229 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 ADRB1P08588 477 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 SULT1A2P50226 295 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 FAM53BQ14153 422 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 ARL13AQ5H913 290 aaPredicted RBP6.71□□□□□ -1.34
SCN9A-202ENST00000409435 FAM69AQ5T7M9 428 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 LYRM7Q5U5X0 104 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 REEP3Q6NUK4 255 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 TRILQ7L0X0 811 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 RETREG3Q86VR2 466 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 KDM8Q8N371 416 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 RELL2Q8NC24 303 aaPredicted RBP6.71□□□□□ -1.34
SCN9A-202ENST00000409435 M1APQ8TC57 530 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 GEMIN6Q8WXD5 167 aaKnown RBP6.71□□□□□ -1.34
SCN9A-202ENST00000409435 VSX1Q9NZR4 365 aaPredicted RBP6.71□□□□□ -1.34
SCN9A-202ENST00000409435 CTSFQ9UBX1 484 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 ANKRD31Q8N7Z5 1873 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 SLC5A10A0PJK1 596 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 MEIOCA2RUB1 952 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 UTS2O95399 124 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 TRAPPC2P0DI81 140 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 TRAPPC2BP0DI82 140 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 HOXA6P31267 233 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 ARSDP51689 593 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms