RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 OR4C16Q8NGL9 310 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 NUBPLQ8TB37 319 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 RGMAQ96B86 450 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 BMFQ96LC9 184 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 CDCA3Q99618 268 aaPredicted RBP11.86□□□□□ -0.51
PTPRN-202ENST00000409251 MTCH2Q9Y6C9 303 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 FREM2Q5SZK8 3169 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 EP300Q09472 2414 aaPredicted RBP11.86□□□□□ -0.51
PTPRN-202ENST00000409251 A8MXK9 166 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 SLC25A12O75746 678 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 CD3DP04234 171 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 HIST1H2ABP04908 130 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 F3P13726 295 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 CTSEP14091 401 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 ZNF14P17017 642 aaPredicted RBP11.86□□□□□ -0.51
PTPRN-202ENST00000409251 GABRG2P18507 467 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 SRMP19623 302 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 BCL6P41182 706 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 EIF2B1Q14232 305 aaKnown RBP11.86□□□□□ -0.51
PTPRN-202ENST00000409251 ADAMTSL4Q6UY14 1074 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 HIST3H2AQ7L7L0 130 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 GID4Q8IVV7 300 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 GATSQ8NAP1 163 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 OR5M9Q8NGP3 310 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 TSEN15Q8WW01 171 aaKnown RBP11.86□□□□□ -0.51
PTPRN-202ENST00000409251 HIST1H2ACQ93077 130 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 ISOC2Q96AB3 205 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 MS4A4EQ96PG1 132 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 KLHL42Q9P2K6 505 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 DHCR7Q9UBM7 475 aaKnown RBP11.86□□□□□ -0.51
PTPRN-202ENST00000409251 IGKV1-8A0A0C4DH67 115 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 ZNF879B4DU55 563 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 DCNP07585 359 aaKnown RBP11.86□□□□□ -0.51
PTPRN-202ENST00000409251 AKR1C4P17516 323 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 P2RX1P51575 399 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 MTSS1LQ765P7 747 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 OVCH2Q7RTZ1 564 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 CAMKMTQ7Z624 323 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 LDLRAD3Q86YD5 345 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 OR6V1Q8N148 313 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 STEAP2Q8NFT2 490 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 THEM6Q8WUY1 208 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 APOBEC4Q8WW27 367 aaKnown RBP11.86□□□□□ -0.51
PTPRN-202ENST00000409251 TCEAL3Q969E4 200 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 OR2M4Q96R27 311 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 SGPP1Q9BX95 441 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 MBD2Q9UBB5 411 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 KNTC1P50748 2209 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 SLC22A31A6NKX4 558 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 M0R036 132 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 PEX12O00623 359 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 FGF2P09038 288 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 DAOP14920 347 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 ZNF28P17035 718 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 FAUP35544 74 aaKnown RBP11.85□□□□□ -0.51
PTPRN-202ENST00000409251 RAB28P51157 221 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 ARMC10Q8N2F6 343 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 ZNF615Q8N8J6 731 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 OR2A1Q8NGT9 310 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 OR14A16Q8NHC5 309 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 SFT2D1Q8WV19 159 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 BPIFA2Q96DR5 249 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 HS6ST2Q96MM7 605 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 NMNAT3Q96T66 252 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 C1QTNF2Q9BXJ5 285 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 ZNF350Q9GZX5 532 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 POLMQ9NP87 494 aaPredicted RBP11.85□□□□□ -0.51
PTPRN-202ENST00000409251 KRCC1Q9NPI7 259 aaPredicted RBP11.85□□□□□ -0.51
PTPRN-202ENST00000409251 PRDM6Q9NQX0 595 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 FBXL21Q9UKT6 434 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 ICKQ9UPZ9 632 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 IER3IP1Q9Y5U9 82 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 ZNF780BQ9Y6R6 833 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 C4orf51C9J302 202 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 EIF3GO75821 320 aaKnown RBP eCLIP11.85□□□□□ -0.51
PTPRN-202ENST00000409251 VASPP50552 380 aaPredicted RBP11.85□□□□□ -0.51
PTPRN-202ENST00000409251 CSNK1G2P78368 415 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 STPG1Q5TH74 334 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 OR10K2Q6IF99 312 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 PARGQ86W56 976 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 RAB42Q8N4Z0 105 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 CHST4Q8NCG5 386 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 C14orf79Q96F83 325 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 SLC6A7Q99884 636 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 TEX101Q9BY14 249 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 ATG5Q9H1Y0 275 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 ZMIZ1Q9ULJ6 1067 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 HELZP42694 1942 aaKnown RBP11.85□□□□□ -0.51
PTPRN-202ENST00000409251 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 A0A1B0GUH1 482 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 C4orf47A7E2U8 309 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 NPIPB8E9PQR5 432 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 TBX6O95947 436 aaPredicted RBP11.85□□□□□ -0.51
PTPRN-202ENST00000409251 NPBWR1P48145 328 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 CAPZA1P52907 286 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 SRSF3P84103 164 aaKnown RBP11.85□□□□□ -0.51
PTPRN-202ENST00000409251 PDE7AQ13946 482 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 GAS6Q14393 721 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 PDZD11Q5EBL8 140 aa11.85□□□□□ -0.51
PTPRN-202ENST00000409251 GALNTL5Q7Z4T8 443 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms