RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 PIP5K1CO60331 668 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 MRPL33O75394 65 aaKnown RBP10.55□□□□□ -0.72
PTPRF-203ENST00000372407 ITGB8P26012 769 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 BTG1P62324 171 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 OXA1LQ15070 435 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 SLC35D3Q5M8T2 416 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 SLC22A24Q8N4F4 322 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 LYSMD1Q96S90 227 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 EMC7Q9NPA0 242 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 THAP10Q9P2Z0 257 aaPredicted RBP10.55□□□□□ -0.72
PTPRF-203ENST00000372407 MRPS28Q9Y2Q9 187 aaKnown RBP10.55□□□□□ -0.72
PTPRF-203ENST00000372407 TMED7Q9Y3B3 224 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 PCDHGA1Q9Y5H4 931 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 WIF1Q9Y5W5 379 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 MYO5AQ9Y4I1 1855 aaKnown RBP10.55□□□□□ -0.72
PTPRF-203ENST00000372407 TOR1AO14656 332 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 MSTNO14793 375 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 STK17BO94768 372 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 SERPINA7P05543 415 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 NID1P14543 1247 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 S100A11P31949 105 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 BCL6P41182 706 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 HTR5AP47898 357 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 MANEAQ5SRI9 462 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 Q6ZTK2 550 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 ADIPOR2Q86V24 386 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 RBM45Q8IUH3 476 aaKnown RBP10.55□□□□□ -0.72
PTPRF-203ENST00000372407 TEAD3Q99594 435 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 FGF21Q9NSA1 209 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 SDHAF2Q9NX18 166 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 LRIT2A6NDA9 550 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 GLCEO94923 617 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 UTS2O95399 124 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 MSL3P1P0C860 447 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 CPT2P23786 658 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 EPHA4P54764 986 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 PLA2G7Q13093 441 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 ZNF750Q32MQ0 723 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 CD276Q5ZPR3 534 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 SH2D5Q6ZV89 423 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 AGBL5Q8NDL9 886 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 FAM3DQ96BQ1 224 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 CDCA4Q9BXL8 241 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 SLC25A37Q9NYZ2 338 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 EMC9Q9Y3B6 208 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 MMACHCQ9Y4U1 282 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 LRRC37AA6NMS7 1700 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 PRICKLE3O43900 615 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 KCNK2O95069 426 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 IGLV3-25P01717 112 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 FCGR2AP12318 317 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 SLC6A12P48065 614 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 PPT1P50897 306 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 TEKQ02763 1124 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 MZT1Q08AG7 82 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 C9orf50Q5SZB4 431 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 PAPD4Q6PIY7 484 aaKnown RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 AAED1Q7RTV5 226 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 SPPL3Q8TCT6 385 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 SLC25A46Q96AG3 418 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 SDSLQ96GA7 329 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 ZBP1Q9H171 429 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 BOKQ9UMX3 212 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 GPR55Q9Y2T6 319 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 PLSCR5A0PG75 271 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 ZNF705FA8MVS1 300 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 PDGFAP04085 211 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 ZNF705DP0CH99 300 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 ZNF705BP0CI00 300 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 BMP1P13497 986 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 GP2P55259 537 aaKnown RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 NR0B2Q15466 257 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 STK11Q15831 433 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 ESCO2Q56NI9 601 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 GLYATL3Q5SZD4 288 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 OTUD1Q5VV17 481 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 AFMIDQ63HM1 303 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 NKAIN4Q8IVV8 208 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 CLEC1AQ8NC01 280 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 MAP3K3Q99759 626 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 CRISPLD2Q9H0B8 497 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 C1orf123Q9NWV4 160 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 FAM186AA6NE01 2351 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 FER1L6Q2WGJ9 1857 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 A0A0B4J2A0 478 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 A0A0U1RQK1 487 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 RPS10-NUDT3A0A1W2PQS6 291 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 A8MVM7 634 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 MCRIP1C9JLW8 97 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 TMX2-CTNND1H3BSU7 103 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 ZNF780AO75290 641 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 ICAM2P13598 275 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 SRMP19623 302 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 RPS10P46783 165 aaKnown RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 CTU2Q2VPK5 515 aaKnown RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 PTCRAQ6ISU1 281 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 VASH1Q7L8A9 365 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-203ENST00000372407 NKAIN3Q8N8D7 197 aa10.54□□□□□ -0.72
PTPRF-203ENST00000372407 PCNPQ8WW12 178 aaKnown RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms