RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PRTFDC1Q9NRG1 225 aa11.06□□□□□ -0.64
CLIP3-201ENST00000360535 GRHPRQ9UBQ7 328 aa11.06□□□□□ -0.64
CLIP3-201ENST00000360535 A0A0J9YY10 115 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 RBBP9O75884 186 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 GLCEO94923 617 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 ECDO95905 644 aaPredicted RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 PBX2P40425 430 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 CD226Q15762 336 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 LRRN1Q6UXK5 716 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 IDO2Q6ZQW0 420 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 BCORP1Q8N888 145 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 RBPMSQ93062 196 aaKnown RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 HGDQ93099 445 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 NKD1Q969G9 470 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 PMEPA1Q969W9 287 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 MRPL48Q96GC5 212 aaKnown RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 C7orf50Q9BRJ6 194 aaKnown RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 TRAF4Q9BUZ4 470 aaPredicted RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 MRM2Q9UI43 246 aaKnown RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 FBXL21Q9UKT6 434 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 POMT2Q9UKY4 750 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 PCNX3Q9H6A9 2034 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 A0A087WUJ7 227 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 SHOXO15266 292 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 ZNF35P13682 527 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 HNRNPA2B1P22626 353 aaKnown RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 NFYAP23511 347 aaPredicted RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 MAP2K6P52564 334 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 RAB38P57729 211 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 ALKBH1Q13686 389 aaKnown RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 ZCCHC12Q6PEW1 402 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 ZNF321PQ8N8H1 164 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 CTHRC1Q96CG8 243 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 LINC00052Q96N35 136 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 OR8D2Q9GZM6 311 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 TTYH1Q9H313 450 aaPredicted RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 GPN1Q9HCN4 374 aaPredicted RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 RABL2AQ9UBK7 228 aaPredicted RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 ICAM5Q9UMF0 924 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 TCRBV16S1A1N1A0A5B0 115 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 SPDEFO95238 335 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 ACSM4P0C7M7 580 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 S1PR1P21453 382 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 RBM34P42696 430 aaKnown RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 MAZP56270 477 aaKnown RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 Q499Y3 187 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 LRRC37A5PQ49AS3 106 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 CLLU1Q5K131 121 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 C1QL3Q5VWW1 255 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 GLDNQ6ZMI3 551 aaPredicted RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 MED25Q71SY5 747 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 BOLLQ8N9W6 283 aaKnown RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 PLPP7Q8NBV4 271 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 CHST6Q9GZX3 395 aa11.05□□□□□ -0.64
CLIP3-201ENST00000360535 FBXO9Q9UK97 447 aaPredicted RBP11.05□□□□□ -0.64
CLIP3-201ENST00000360535 UBE2QL1A1L167 161 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 TNFSF14O43557 240 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 GSTZ1O43708 216 aaPredicted RBP11.04□□□□□ -0.64
CLIP3-201ENST00000360535 TACSTD2P09758 323 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 FNTBP49356 437 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 HHEXQ03014 270 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 BAIAP2L2Q6UXY1 529 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 PM20D2Q8IYS1 436 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 DND1Q8IYX4 353 aaKnown RBP11.04□□□□□ -0.64
CLIP3-201ENST00000360535 OR51S1Q8NGJ8 323 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 KTI12Q96EK9 354 aaPredicted RBP11.04□□□□□ -0.64
CLIP3-201ENST00000360535 MRGPRX1Q96LB2 322 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 VSTM2LQ96N03 204 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 AMELYQ99218 206 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 ZNF426Q9BUY5 554 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 OR10A5Q9H207 317 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 SLC22A13Q9Y226 551 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 ACOT7O00154 380 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 GPRIN2O60269 458 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 AKR7A3O95154 331 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 HIST1H2ABP04908 130 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 CT45A8P0DMV1 189 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 CT45A9P0DMV2 189 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 VSIG10L2P0DP72 767 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 ARHGDIBP52566 201 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 CT45A2Q5DJT8 189 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 LINC01590Q5TEZ4 76 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 HIST3H2AQ7L7L0 130 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 ZNF627Q7L945 461 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 GRAMD2AQ8IUY3 354 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 MCATQ8IVS2 390 aaKnown RBP11.04□□□□□ -0.64
CLIP3-201ENST00000360535 OR4C16Q8NGL9 310 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 HIST1H2ACQ93077 130 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 ADOQ96SZ5 270 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 SOHLH2Q9NX45 425 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 PIPOXQ9P0Z9 390 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 KCNG2Q9UJ96 466 aa11.04□□□□□ -0.64
CLIP3-201ENST00000360535 CDK2AP1O14519 115 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 RRASP10301 218 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 MAP3K8P41279 467 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 ATXN7L3Q14CW9 347 aaPredicted RBP11.03□□□□□ -0.64
CLIP3-201ENST00000360535 OR6V1Q8N148 313 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 LSMEM1Q8N8F7 131 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 ZNF524Q96C55 264 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 PBX4Q9BYU1 374 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms