RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 HAVCR2Q8TDQ0 301 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 DAZLQ92904 295 aaKnown RBP17.55■□□□□ 0.4
COL9A3-201ENST00000343916 MAP6Q96JE9 813 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 CHRDQ9H2X0 955 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 IKZF2Q9UKS7 526 aa17.55■□□□□ 0.4
COL9A3-201ENST00000343916 TMEM265A0A087WTH1 108 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 KANSL1Q7Z3B3 1105 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 CMTM4Q8IZR5 234 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 FGF21Q9NSA1 209 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 TAS2R5Q9NYW4 299 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 COPS7AQ9UBW8 275 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 MOKQ9UQ07 419 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 SLC6A5Q9Y345 797 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 PCDHGA9Q9Y5G4 932 aaKnown RBP17.54■□□□□ 0.4
COL9A3-201ENST00000343916 A0A0A6YYJ9 748 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 TXNDC12O95881 172 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 MMP15P51511 669 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 FAM220AQ7Z4H9 259 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 CDC20BQ86Y33 519 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 SERPINA12Q8IW75 414 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 FKRPQ9H9S5 495 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 LAMP5Q9UJQ1 280 aa17.54■□□□□ 0.4
COL9A3-201ENST00000343916 ASCC3Q8N3C0 2202 aaKnown RBP17.53■□□□□ 0.4
COL9A3-201ENST00000343916 A0A1B0GX78 115 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 IFITM5A6NNB3 132 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 ALG1L2C9J202 215 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 C1QBP02746 253 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 GLB1P16278 677 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 SLC6A8P48029 635 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 P2RX3P56373 397 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.53■□□□□ 0.4
COL9A3-201ENST00000343916 SIX5Q8N196 739 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 OR1N1Q8NGS0 311 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 OR2T4Q8NH00 348 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 THEM6Q8WUY1 208 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 COLQQ9Y215 455 aaPredicted RBP17.53■□□□□ 0.4
COL9A3-201ENST00000343916 MRPS17Q9Y2R5 130 aaKnown RBP17.53■□□□□ 0.4
COL9A3-201ENST00000343916 HSPB11Q9Y547 144 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 ABHD16AO95870 558 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 BGLAPP02818 100 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 ANKRD34CP0C6C1 535 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 GIMD1P0DJR0 217 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 GIFP27352 417 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 CCR6P51684 374 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 OR5M10Q6IEU7 315 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 LRRC69Q6ZNQ3 347 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 SLC29A4Q7RTT9 530 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 PLCZ1Q86YW0 608 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 OR5AK2Q8NH90 309 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 OIT3Q8WWZ8 545 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 AKAP1Q92667 903 aaKnown RBP eCLIP17.53■□□□□ 0.42e-7■□□□□ 10.8
COL9A3-201ENST00000343916 SLC41A2Q96JW4 573 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 AMELYQ99218 206 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 LIN7BQ9HAP6 207 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 ING3Q9NXR8 418 aa17.53■□□□□ 0.4
COL9A3-201ENST00000343916 BCAT2O15382 392 aaPredicted RBP17.52■□□□□ 0.4
COL9A3-201ENST00000343916 TACSTD2P09758 323 aa17.52■□□□□ 0.4
COL9A3-201ENST00000343916 DCAF7P61962 342 aa17.52■□□□□ 0.4
COL9A3-201ENST00000343916 TNK1Q13470 666 aa17.52■□□□□ 0.4
COL9A3-201ENST00000343916 ALKBH1Q13686 389 aaKnown RBP17.52■□□□□ 0.4
COL9A3-201ENST00000343916 UBE2NLQ5JXB2 153 aa17.52■□□□□ 0.4
COL9A3-201ENST00000343916 SLC6A19Q695T7 634 aa17.52■□□□□ 0.4
COL9A3-201ENST00000343916 TIGD3Q6B0B8 471 aa17.52■□□□□ 0.4
COL9A3-201ENST00000343916 FAM199XQ6PEV8 388 aaPredicted RBP17.52■□□□□ 0.4
COL9A3-201ENST00000343916 RFPL4BQ6ZWI9 263 aa17.52■□□□□ 0.4
COL9A3-201ENST00000343916 FCRLAQ7L513 359 aa17.52■□□□□ 0.4
COL9A3-201ENST00000343916 LIX1LQ8IVB5 337 aa17.52■□□□□ 0.4
COL9A3-201ENST00000343916 SDR16C5Q8N3Y7 309 aa17.52■□□□□ 0.4
COL9A3-201ENST00000343916 ZNF501Q96CX3 271 aaPredicted RBP17.52■□□□□ 0.4
COL9A3-201ENST00000343916 MFRPQ9BY79 579 aa17.52■□□□□ 0.4
COL9A3-201ENST00000343916 PCED1AQ9H1Q7 454 aa17.52■□□□□ 0.4
COL9A3-201ENST00000343916 MRPL15Q9P015 296 aaKnown RBP17.52■□□□□ 0.4
COL9A3-201ENST00000343916 AIPO00170 330 aa17.52■□□□□ 0.39
COL9A3-201ENST00000343916 SLC25A12O75746 678 aa17.52■□□□□ 0.39
COL9A3-201ENST00000343916 RENP00797 406 aa17.52■□□□□ 0.39
COL9A3-201ENST00000343916 MT-ND4P03905 459 aa17.52■□□□□ 0.39
COL9A3-201ENST00000343916 PITPNAQ00169 270 aa17.52■□□□□ 0.39
COL9A3-201ENST00000343916 SMAD2Q15796 467 aaKnown RBP17.52■□□□□ 0.39
COL9A3-201ENST00000343916 LAMTOR1Q6IAA8 161 aa17.52■□□□□ 0.39
COL9A3-201ENST00000343916 DNAAF1Q8NEP3 725 aa17.52■□□□□ 0.39
COL9A3-201ENST00000343916 OR51A4Q8NGJ6 313 aa17.52■□□□□ 0.39
COL9A3-201ENST00000343916 OR10AC1Q8NH08 325 aa17.52■□□□□ 0.39
COL9A3-201ENST00000343916 PTDSS2Q9BVG9 487 aa17.52■□□□□ 0.39
COL9A3-201ENST00000343916 OR11A1Q9GZK7 315 aa17.52■□□□□ 0.39
COL9A3-201ENST00000343916 CAMK2AQ9UQM7 478 aa17.52■□□□□ 0.39
COL9A3-201ENST00000343916 CDC40O60508 579 aaKnown RBP eCLIP17.51■□□□□ 0.39
COL9A3-201ENST00000343916 TCRBP04435 133 aa17.51■□□□□ 0.39
COL9A3-201ENST00000343916 AFF3P51826 1226 aaKnown RBP17.51■□□□□ 0.39
COL9A3-201ENST00000343916 EMC4Q5J8M3 183 aa17.51■□□□□ 0.39
COL9A3-201ENST00000343916 EEF1A1P5Q5VTE0 462 aa17.51■□□□□ 0.39
COL9A3-201ENST00000343916 STAC2Q6ZMT1 411 aa17.51■□□□□ 0.39
COL9A3-201ENST00000343916 TMPRSS9Q7Z410 1059 aa17.51■□□□□ 0.39
COL9A3-201ENST00000343916 THAP3Q8WTV1 239 aaPredicted RBP17.51■□□□□ 0.39
COL9A3-201ENST00000343916 SLC25A38Q96DW6 304 aa17.51■□□□□ 0.39
COL9A3-201ENST00000343916 ULBP3Q9BZM4 244 aa17.51■□□□□ 0.39
COL9A3-201ENST00000343916 NIPAL2Q9H841 368 aa17.51■□□□□ 0.39
COL9A3-201ENST00000343916 KCNG2Q9UJ96 466 aa17.51■□□□□ 0.39
COL9A3-201ENST00000343916 V9GY05 133 aa17.51■□□□□ 0.39
COL9A3-201ENST00000343916 TRAV36DV7A0A075B6V5 113 aa17.5■□□□□ 0.39
COL9A3-201ENST00000343916 C2orf72A6NCS6 295 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms