RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TBC1D3DA0A087WVF3 549 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 TBC1D3IA0A087WXS9 549 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 TBC1D3LB9A6J9 549 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 TBC1D3HP0C7X1 549 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 MECP2P51608 486 aaKnown RBP20.39■□□□□ 0.85
TRIM28-202ENST00000341753 MRPS10P82664 201 aaKnown RBP20.39■□□□□ 0.85
TRIM28-202ENST00000341753 TBC1D3CQ6IPX1 549 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 TBC1D3Q8IZP1 549 aaPredicted RBP20.39■□□□□ 0.85
TRIM28-202ENST00000341753 OR10K1Q8NGX5 313 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 OR10Z1Q8NGY1 313 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 OR5AK2Q8NH90 309 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 SERINC2Q96SA4 455 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 PCDHB16Q9NRJ7 776 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 IGKV1D-16P01601 117 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 POU2F2P09086 479 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 ZNF169Q14929 603 aaPredicted RBP20.39■□□□□ 0.85
TRIM28-202ENST00000341753 LIPNQ5VXI9 398 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 OR51D1Q8NGF3 324 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 CCL4L1Q8NHW4 92 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 SLC25A28Q96A46 364 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 ALG12Q9BV10 488 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 SLC17A9Q9BYT1 436 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 EXO5Q9H790 373 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 TBC1D29Q9UFV1 150 aa20.39■□□□□ 0.85
TRIM28-202ENST00000341753 POM121BA6NF01 834 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 TVP23AA6NH52 213 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 CD3DP04234 171 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 C5AR1P21730 350 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 LBX1P52954 281 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 RPS15AP62244 130 aaKnown RBP20.38■□□□□ 0.85
TRIM28-202ENST00000341753 Q499Y3 187 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 BEX5Q5H9J7 111 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 LRRTM1Q86UE6 522 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 SAMD14Q8IZD0 417 aaPredicted RBP20.38■□□□□ 0.85
TRIM28-202ENST00000341753 PXT1Q8NFP0 134 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 TIMM29Q9BSF4 260 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 GON4LQ3T8J9 2241 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 H7C1C5 153 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 H7C417 338 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 K7EQS6 105 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 ATXN8OSP0DMR3 200 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 LCN6P62502 163 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 BIVMQ86UB2 503 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 OR52R1Q8NGF1 315 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 OR10G6Q8NH81 332 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 PHYHIPQ92561 330 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 RXFP3Q9NSD7 469 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 MTFP1Q9UDX5 166 aa20.38■□□□□ 0.85
TRIM28-202ENST00000341753 MRM2Q9UI43 246 aaKnown RBP20.38■□□□□ 0.85
TRIM28-202ENST00000341753 TRAV18A0A075B6X5 111 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 BLOC1S5-TXNDC5H3BN57 136 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 NDUFA2O43678 99 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 CDC123O75794 336 aaPredicted RBP20.37■□□□□ 0.85
TRIM28-202ENST00000341753 CD1AP06126 327 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 MPGP29372 298 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 FAUP35544 74 aaKnown RBP20.37■□□□□ 0.85
TRIM28-202ENST00000341753 CDKN2AP42771 156 aaKnown RBP20.37■□□□□ 0.85
TRIM28-202ENST00000341753 GMFBP60983 142 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 STK11Q15831 433 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 PRICKLE4Q2TBC4 344 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 LRRN1Q6UXK5 716 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 TMED4Q7Z7H5 227 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 ADAD1Q96M93 576 aaKnown RBP20.37■□□□□ 0.85
TRIM28-202ENST00000341753 IKZF2Q9UKS7 526 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 RAD1O60671 282 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 PGDP52209 483 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 LINC01590Q5TEZ4 76 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 LINC00518Q8N0U6 118 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 LSM14AQ8ND56 463 aaKnown RBP20.37■□□□□ 0.85
TRIM28-202ENST00000341753 OR2A5Q96R48 311 aa20.37■□□□□ 0.85
TRIM28-202ENST00000341753 SRA1Q9HD15 236 aaKnown RBP20.37■□□□□ 0.85
TRIM28-202ENST00000341753 MKKSQ9NPJ1 570 aaPredicted RBP20.37■□□□□ 0.85
TRIM28-202ENST00000341753 LRRC37A5PQ49AS3 106 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 NSMAFQ92636 917 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 STACQ99469 402 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 WDR13Q9H1Z4 485 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 STARD5Q9NSY2 213 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 TAS2R3Q9NYW6 316 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 TICRRQ7Z2Z1 1910 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 TRAV14DV4A0A0A6YYC5 116 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 EGFP01133 1207 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 PVRP15151 417 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 COL9A1P20849 921 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 TFF2Q03403 129 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 TRIM2Q9C040 744 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 SRMSQ9H3Y6 488 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 POFUT1Q9H488 388 aa20.36■□□□□ 0.85
TRIM28-202ENST00000341753 XRCC3O43542 346 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 PRAMEF2O60811 474 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 UPK3AO75631 287 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 GPANK1O95872 356 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 ADH1BP00325 375 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 RPS21P63220 83 aaKnown RBP20.35■□□□□ 0.85
TRIM28-202ENST00000341753 MGAT2Q10469 447 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 ALKBH1Q13686 389 aaKnown RBP20.35■□□□□ 0.85
TRIM28-202ENST00000341753 EXOSC6Q5RKV6 272 aaKnown RBP20.35■□□□□ 0.85
TRIM28-202ENST00000341753 ZNF684Q5T5D7 378 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 RNF44Q7L0R7 432 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 FAM220AQ7Z4H9 259 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 CLRN3Q8NCR9 226 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms