RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SOX7Q9BT81 388 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 CD63P08962 238 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 SHC1P29353 583 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 CCL14Q16627 93 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 SLC5A12Q1EHB4 618 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 LEXMQ3ZCV2 418 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 FGGYQ96C11 551 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 MED20Q9H944 212 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 SLC2A8Q9NY64 477 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 ENSAO43768 121 aaKnown RBP12.87□□□□□ -0.35
CSPG4-201ENST00000308508 RAF1P04049 648 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 FAM3DQ96BQ1 224 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 FOXN4Q96NZ1 517 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 ARFGEF2Q9Y6D5 1785 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 G3V3Q6 166 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 PTBP3O95758 552 aaKnown RBP12.87□□□□□ -0.35
CSPG4-201ENST00000308508 DEFA4P12838 97 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 NTF3P20783 257 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 PITX1P78337 314 aaPredicted RBP12.87□□□□□ -0.35
CSPG4-201ENST00000308508 SLC36A2Q495M3 483 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 USP53Q70EK8 1073 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 DCLRE1CQ96SD1 692 aaKnown RBP12.87□□□□□ -0.35
CSPG4-201ENST00000308508 SPACA1Q9HBV2 294 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 BOLA1Q9Y3E2 137 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 RAC1P63000 192 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 OR5B3Q8NH48 314 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 MN1Q10571 1320 aaPredicted RBP12.86□□□□□ -0.35
CSPG4-201ENST00000308508 hCG_1809904A0A1W2PP81 198 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 A0A1W2PPE2 198 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 A0A1W2PR64 198 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 A0A1W2PRV1 198 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 ANKUB1A6NFN9 424 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 K7ERQ8 282 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 CT45A10P0DMU9 189 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 CPMP14384 443 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 HNRNPA2B1P22626 353 aaKnown RBP12.86□□□□□ -0.35
CSPG4-201ENST00000308508 HOXA11P31270 313 aaPredicted RBP12.86□□□□□ -0.35
CSPG4-201ENST00000308508 HNRNPA3P51991 378 aaKnown RBP12.86□□□□□ -0.35
CSPG4-201ENST00000308508 DEFB110Q30KQ9 67 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 ACOT7LQ6ZUV0 252 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 OR13C8Q8NGS7 320 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 OR11L1Q8NGX0 322 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 GNPNAT1Q96EK6 184 aaPredicted RBP12.86□□□□□ -0.35
CSPG4-201ENST00000308508 OR51I2Q9H344 312 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 HEYLQ9NQ87 328 aaPredicted RBP12.86□□□□□ -0.35
CSPG4-201ENST00000308508 FBXO8Q9NRD0 319 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 CSAG2Q9Y5P2 127 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 F10P00742 488 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 ARHGAP11BQ3KRB8 267 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 COL13A1Q5TAT6 717 aaPredicted RBP12.86□□□□□ -0.35
CSPG4-201ENST00000308508 OR8G2PQ6IF36 304 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 OR6K3Q8NGY3 331 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 BRI3BPQ8WY22 251 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 EMC9Q9Y3B6 208 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 ASAH1Q13510 395 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 COTL1Q14019 142 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 SLC16A14Q7RTX9 510 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 TSLPQ969D9 159 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 PLEKHF2Q9H8W4 249 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 CA12O43570 354 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 AP1G1O43747 822 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 RGS11O94810 467 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 JUNBP17275 347 aaPredicted RBP12.86□□□□□ -0.35
CSPG4-201ENST00000308508 HIST1H1TP22492 207 aaPredicted RBP12.86□□□□□ -0.35
CSPG4-201ENST00000308508 F2RP25116 425 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 IL3RAP26951 378 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 SLC17A1Q14916 467 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 C11orf91Q3C1V1 193 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 C17orf107Q6ZR85 190 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 FOXJ1Q92949 421 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 TMEM11P17152 192 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 ZNF90Q03938 601 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 ALKBH1Q13686 389 aaKnown RBP12.86□□□□□ -0.35
CSPG4-201ENST00000308508 PRICKLE2Q7Z3G6 844 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 ASB13Q8WXK3 278 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 C3orf30Q96M34 536 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 SNX11Q9Y5W9 270 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 M0QYG6 137 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 CIDEAO60543 219 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 F13BP05160 661 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 ITGB8P26012 769 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 OR2B8PP59922 312 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 PMPCAQ10713 525 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 ARSGQ96EG1 525 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 GOLT1BQ9Y3E0 138 aa12.86□□□□□ -0.35
CSPG4-201ENST00000308508 ZNF264O43296 627 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 OR51A4Q8NGJ6 313 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 FAM103A1Q9BTL3 118 aaKnown RBP12.85□□□□□ -0.35
CSPG4-201ENST00000308508 TMEM221A6NGB7 291 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 FAM155AB1AL88 458 aaPredicted RBP12.85□□□□□ -0.35
CSPG4-201ENST00000308508 SUSD5O60279 629 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 GALR3O60755 368 aaPredicted RBP12.85□□□□□ -0.35
CSPG4-201ENST00000308508 NTSR1P30989 418 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 CSN1S1P47710 185 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 CDK5Q00535 292 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 GLYATL3Q5SZD4 288 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 CGB2Q6NT52 195 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 CADM3Q8N126 398 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 SUMF1Q8NBK3 374 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 OR6M1Q8NGM8 313 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms