RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 GINS3Q9BRX5 216 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 MRPL13Q9BYD1 178 aaKnown RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 CERS4Q9HA82 394 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 KCNK7Q9Y2U2 307 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 C11orf98E9PRG8 122 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 SOD1P00441 154 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 OR12D1P0DN82 309 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ADRB3P13945 408 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 NFYAP23511 347 aaPredicted RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 CD81P60033 236 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ZNF74Q16587 644 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 CCL14Q16627 93 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 TOMM20LQ6UXN7 152 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ERN2Q76MJ5 926 aaKnown RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 DPPA4Q7L190 304 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 GPR26Q8NDV2 337 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 OR52P1PQ8NH57 321 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 M1APQ8TC57 530 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 PTP4A1Q93096 173 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 MAL2Q969L2 176 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 MTHFD2LQ9H903 347 aaPredicted RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 ADAP2Q9NPF8 381 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 MUTYHQ9UIF7 546 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 TMEM200CA6NKL6 621 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 FABP7O15540 132 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 OR2F2O95006 317 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ATP1B1P05026 303 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ZNF865P0CJ78 1059 aaPredicted RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 TBPP20226 339 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 TACR1P25103 407 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 KIAA1024LP59773 190 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 UBE2MP61081 183 aaKnown RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 OR2F1Q13607 317 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 PDLIM3Q53GG5 364 aaPredicted RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 PLA1AQ53H76 456 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 C6orf120Q7Z4R8 191 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 TCEAL8Q8IYN2 117 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 GPR135Q8IZ08 494 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ZNF417Q8TAU3 575 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 RNF128Q8TEB7 428 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 TFGQ92734 400 aaPredicted RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 FOXJ1Q92949 421 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 MR1Q95460 341 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 GHITMQ9H3K2 345 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 PLEKHB1Q9UF11 243 aaPredicted RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 RALGAPA2Q2PPJ7 1873 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 GGT3PA6NGU5 568 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 CEBPZOSA8MTT3 80 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 MPTX1A8MV57 137 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 GABRPO00591 440 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 ADAM11O75078 769 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 RDH16O75452 317 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 HLA-HP01893 362 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 ACAA2P42765 397 aaKnown RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 TLE4Q04727 773 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 SMUG1Q53HV7 270 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 TTC32Q5I0X7 151 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 RBMS3Q6XE24 437 aaKnown RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 SHFQ7M4L6 423 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 PRR22Q8IZ63 422 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 KDF1Q8NAX2 398 aaPredicted RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 UBAC2Q8NBM4 344 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 OR2M7Q8NG81 312 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 HUS1BQ8NHY5 278 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 THAP4Q8WY91 577 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 ORAI1Q96D31 301 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 LINC00615Q96LM1 132 aaPredicted RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 KLF16Q9BXK1 252 aaPredicted RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 PDE7BQ9NP56 450 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 SLC39A9Q9NUM3 307 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 RNF19AQ9NV58 838 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 TAS2R5Q9NYW4 299 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 ZNF835Q9Y2P0 537 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 YTHDF2Q9Y5A9 579 aaKnown RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 ANKRD30BLA7E2S9 258 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 DCTN6O00399 190 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 HCRTO43612 131 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 ELFN1P0C7U0 828 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 S100A11P31949 105 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 AMTP48728 403 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 MEOX1P50221 254 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 BLKP51451 505 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 EMP1P54849 157 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 OR51T1Q8NGJ9 327 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 OR6N1Q8NGY5 312 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 GPR148Q8TDV2 347 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 SORCS1Q8WY21 1168 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 SLC25A31Q9H0C2 315 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 TMEM231Q9H6L2 316 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 PRDM7Q9NQW5 492 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 FAM212BQ9NTI7 297 aaPredicted RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 CD84Q9UIB8 345 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 FBXO7Q9Y3I1 522 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 A0A0G2JMZ2 1700 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 A6NLC8 198 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 H3BNC9 293 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 PLA2G10O15496 165 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 ITGBL1O95965 494 aaPredicted RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 AHRP35869 848 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 CRYZQ08257 329 aaKnown RBP5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms