RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 VKORC1Q9BQB6 163 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 TTYH2Q9BSA4 534 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 IFT27Q9BW83 186 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 TXNIPQ9H3M7 391 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 TOR3AQ9H497 397 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 RIBC2Q9H4K1 309 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 IL20RAQ9UHF4 553 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 OSGIN2Q9Y236 505 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 FLVCR1Q9Y5Y0 555 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 ARHGAP21Q5T5U3 1957 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 POLEQ07864 2286 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 TRGV8A0A0C4DH27 118 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 ZAR1LA6NP61 321 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 E9PQ18 207 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 IMPA2O14732 288 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 SS18L1O75177 396 aaPredicted RBP12.76□□□□□ -0.37
UPF1-211ENST00000600868 TXNDC12O95881 172 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 CRHP06850 196 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 IFNGR1P15260 489 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 CEACAM8P31997 349 aaPredicted RBP12.76□□□□□ -0.37
UPF1-211ENST00000600868 POLR2IP36954 125 aaKnown RBP12.76□□□□□ -0.37
UPF1-211ENST00000600868 DAP3P51398 398 aaKnown RBP12.76□□□□□ -0.37
UPF1-211ENST00000600868 RPS6KA3P51812 740 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 SMSP52788 366 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 ERVK-25P63136 954 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 GINS1Q14691 196 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 PTGES3Q15185 160 aaKnown RBP12.76□□□□□ -0.37
UPF1-211ENST00000600868 GUSBP1Q15486 140 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 ACKR1Q16570 336 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 ZIK1Q3SY52 487 aaPredicted RBP12.76□□□□□ -0.37
UPF1-211ENST00000600868 TMEM211Q6ICI0 200 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 SLC27A4Q6P1M0 643 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 C3P1Q6ZMU1 363 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 SLC35D2Q76EJ3 337 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 ATCAYQ86WG3 371 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 TUSC5Q8IXB3 177 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 RPRMLQ8N4K4 120 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 TMEM45BQ96B21 275 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 ZNF570Q96NI8 536 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 MBOAT4Q96T53 435 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 POLDIP3Q9BY77 421 aaKnown RBP12.76□□□□□ -0.37
UPF1-211ENST00000600868 GRIP2Q9C0E4 1043 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 SLC25A19Q9HC21 320 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 ADAM18Q9Y3Q7 739 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 IER3IP1Q9Y5U9 82 aa12.76□□□□□ -0.37
UPF1-211ENST00000600868 AKAP8O43823 692 aaKnown RBP12.75□□□□□ -0.37
UPF1-211ENST00000600868 SERPINI2O75830 405 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 TOXO94900 526 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 PPP1R3DO95685 299 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 BCL10O95999 233 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 PLGP00747 810 aaPredicted RBP12.75□□□□□ -0.37
UPF1-211ENST00000600868 IL2RAP01589 272 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 HMGN1P05114 100 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 SDHAP31040 664 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 GRK5P34947 590 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 CLDN17P56750 224 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 RPL27P61353 136 aaKnown RBP12.75□□□□□ -0.37
UPF1-211ENST00000600868 MYBPC1Q00872 1141 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 IGFBP7Q16270 282 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 PGGHGQ32M88 737 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 TMEM201Q5SNT2 666 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 ARMC4Q5T2S8 1044 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 RIPPLY2Q5TAB7 128 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 EEF1A1P5Q5VTE0 462 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 SLX4IPQ5VYV7 408 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 FAM205BPQ63HN1 556 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 ACSM5Q6NUN0 579 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 HDDC2Q7Z4H3 204 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 MED12LQ86YW9 2145 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 IQCF1Q8N6M8 205 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 OR4Q3Q8NH05 313 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 OR6X1Q8NH79 312 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 ZNF519Q8TB69 540 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 ASB10Q8WXI3 467 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 PHF3Q92576 2039 aaKnown RBP12.75□□□□□ -0.37
UPF1-211ENST00000600868 TXNDC15Q96J42 360 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 HRASLS5Q96KN8 279 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 ADAD1Q96M93 576 aaKnown RBP12.75□□□□□ -0.37
UPF1-211ENST00000600868 ERMAPQ96PL5 475 aaPredicted RBP12.75□□□□□ -0.37
UPF1-211ENST00000600868 ZNF385AQ96PM9 386 aaKnown RBP12.75□□□□□ -0.37
UPF1-211ENST00000600868 TSPAN32Q96QS1 320 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 DMRTA2Q96SC8 542 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 TEX12Q9BXU0 123 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 PARPBPQ9NWS1 579 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 FAM118AQ9NWS6 357 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 GRHPRQ9UBQ7 328 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 SH3BGRL2Q9UJC5 107 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 ZNF346Q9UL40 294 aaKnown RBP12.75□□□□□ -0.37
UPF1-211ENST00000600868 CLEC4AQ9UMR7 237 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 RCE1Q9Y256 329 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 MEMO1Q9Y316 297 aa12.75□□□□□ -0.37
UPF1-211ENST00000600868 DOCK7Q96N67 2140 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 A6NIZ1 184 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 ZNF726A6NNF4 738 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 SLC16A6O15403 523 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 ZNF432O94892 652 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 NOS3P29474 1203 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 AGTR1P30556 359 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 AQP4P55087 323 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 BIDP55957 195 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms