RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 SCAIQ8N9R8 606 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 SMYD1Q8NB12 490 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 C11orf65Q8NCR3 313 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 ZNF540Q8NDQ6 660 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 IL17RDQ8NFM7 739 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 ANKRD27Q96NW4 1050 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 CPPED1Q9BRF8 314 aaPredicted RBP8.51□□□□□ -1.05
VRK3-216ENST00000599342 REPIN1Q9BWE0 567 aaKnown RBP8.51□□□□□ -1.05
VRK3-216ENST00000599342 PRR14Q9BWN1 585 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 BEX2Q9BXY8 128 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 SHARPINQ9H0F6 387 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 PLK3Q9H4B4 646 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 IKZF5Q9H5V7 419 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 ZNF442Q9H7R0 627 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 SEC61A2Q9H9S3 476 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 SLC52A3Q9NQ40 469 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 INTS9Q9NV88 658 aaKnown RBP8.51□□□□□ -1.05
VRK3-216ENST00000599342 TMEM160Q9NX00 188 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 LEF1Q9UJU2 399 aaPredicted RBP8.51□□□□□ -1.05
VRK3-216ENST00000599342 KCNS2Q9ULS6 477 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 TRIM33Q9UPN9 1127 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 USP22Q9UPT9 525 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 NDUFAF1Q9Y375 327 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 NOX1Q9Y5S8 564 aa8.51□□□□□ -1.05
VRK3-216ENST00000599342 LOC390937A0A1W2PQ73 354 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 ZNF726A6NNF4 738 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 MS4A18H0YCH9 400 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 hCG_2039718K7EN88 272 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 SERPINI2O75830 405 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 MFN2O95140 757 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 MT-ATP6P00846 226 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 BGLAPP02818 100 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 VIMP08670 466 aaKnown RBP8.5□□□□□ -1.05
VRK3-216ENST00000599342 CELA3BP08861 270 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 CD79AP11912 226 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 HLA-DOBP13765 273 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 NPR2P20594 1047 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 CDH12P55289 794 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 RBBP4Q09028 425 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 MS4A18Q3C1V0 323 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 TTMPQ5BVD1 217 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 FAM166AQ6J272 317 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 SPATA21Q7Z572 469 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 C20orf196Q8IYI0 205 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 TMEM123Q8N131 208 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 OR6N1Q8NGY5 312 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 ZNF837Q96EG3 531 aaPredicted RBP8.5□□□□□ -1.05
VRK3-216ENST00000599342 SLC41A3Q96GZ6 507 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 LRR1Q96L50 414 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 MCHR1Q99705 422 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 TMEM43Q9BTV4 400 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 EMC6Q9BV81 110 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 RSPO3Q9BXY4 272 aaPredicted RBP8.5□□□□□ -1.05
VRK3-216ENST00000599342 ULBP2Q9BZM5 246 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 CHODLQ9H9P2 273 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 DYNLRB1Q9NP97 96 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 MED29Q9NX70 200 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 MRPL39Q9NYK5 338 aaKnown RBP8.5□□□□□ -1.05
VRK3-216ENST00000599342 POFUT2Q9Y2G5 429 aa8.5□□□□□ -1.05
VRK3-216ENST00000599342 IGHV2OR16-5A0A0B4J2B6 119 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 SLC35F4A4IF30 521 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 HMGB1P1B2RPK0 211 aaPredicted RBP8.49□□□□□ -1.05
VRK3-216ENST00000599342 VWC2LB2RUY7 222 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 M0R3H8 397 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 CHP2O43745 196 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 LMX1BO60663 402 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 FMO6PO60774 539 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 OR6A2O95222 327 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 RAB36O95755 333 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 HPRP00739 348 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 OPN1SWP03999 348 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 C8BP07358 591 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 THBS4P35443 961 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 MTPNP58546 118 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 HGFACQ04756 655 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 SNTB2Q13425 540 aaKnown RBP8.49□□□□□ -1.05
VRK3-216ENST00000599342 CAMK2DQ13557 499 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 NFYCQ13952 458 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 DAG1Q14118 895 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 ADRM1Q16186 407 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 GSG1Q2KHT4 349 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 RUNDC3AQ59EK9 446 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 PHYHD1Q5SRE7 291 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 KRT80Q6KB66 452 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 ZNF613Q6PF04 617 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 DLEU7Q6UYE1 221 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 ZNF813Q6ZN06 617 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 PXKQ7Z7A4 578 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 MYPOPQ86VE0 399 aaPredicted RBP8.49□□□□□ -1.05
VRK3-216ENST00000599342 SLC30A8Q8IWU4 369 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 SVOPLQ8N434 492 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 OR5J2Q8NH18 312 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 SLC26A7Q8TE54 656 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 NEU4Q8WWR8 484 aaPredicted RBP8.49□□□□□ -1.05
VRK3-216ENST00000599342 STON2Q8WXE9 905 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 TMEM158Q8WZ71 300 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 THOC1Q96FV9 657 aaKnown RBP8.49□□□□□ -1.05
VRK3-216ENST00000599342 MAGEB18Q96M61 343 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 FOXN4Q96NZ1 517 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 MOGAT1Q96PD6 335 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms