RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 M0R3G1 203 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 KPNA4O00629 521 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-203ENST00000593582 SERPINI2O75830 405 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 LYPD3O95274 346 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 CH25HO95992 272 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 THY1P04216 161 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 ADORA3P0DMS8 318 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 HLA-DOBP13765 273 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 TAS2R41P59536 307 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 ARF1P84077 181 aaKnown RBP13.33□□□□□ -0.28
TRIM28-203ENST00000593582 ZNF74Q16587 644 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 CLEC12BQ2HXU8 276 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 CEACAM16Q2WEN9 425 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 CARD17Q5XLA6 110 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 B3GLCTQ6Y288 498 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 WDR88Q6ZMY6 472 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 ARPINQ7Z6K5 226 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 TSPYL5Q86VY4 417 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-203ENST00000593582 CARM1Q86X55 608 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 POU5F2Q8N7G0 328 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 OR2T12Q8NG77 320 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 RCN3Q96D15 328 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 LRR1Q96L50 414 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 SLC38A2Q96QD8 506 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 EMC6Q9BV81 110 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 BARX1Q9HBU1 254 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-203ENST00000593582 B3GAT2Q9NPZ5 323 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 NANSQ9NR45 359 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 MED29Q9NX70 200 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 USP22Q9UPT9 525 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 MOKQ9UQ07 419 aa13.33□□□□□ -0.28
TRIM28-203ENST00000593582 IGHV1-18A0A0C4DH31 117 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 ELOVL7A1L3X0 281 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 SLC35F4A4IF30 521 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 ZNF99A8MXY4 864 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-203ENST00000593582 ATP6V1G2-DDX39BF2Z307 99 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 IGHV4-39P01824 125 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 HIST1H2ABP04908 130 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 BMP4P12644 408 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 TNK1Q13470 666 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 C3orf36Q3SXR2 165 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 LRRC23Q53EV4 343 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-203ENST00000593582 DEF8Q6ZN54 512 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 Q71RC1 249 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-203ENST00000593582 HIST3H2AQ7L7L0 130 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 C20orf196Q8IYI0 205 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 FAM169BQ8N8A8 192 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 HIST1H2ACQ93077 130 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 TXNDC15Q96J42 360 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 ADAD1Q96M93 576 aaKnown RBP13.32□□□□□ -0.28
TRIM28-203ENST00000593582 ZNF426Q9BUY5 554 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 CACNG6Q9BXT2 260 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 POLR2J2Q9GZM3 115 aaKnown RBP13.32□□□□□ -0.28
TRIM28-203ENST00000593582 POLR2J3Q9H1A7 115 aaKnown RBP13.32□□□□□ -0.28
TRIM28-203ENST00000593582 NELFAQ9H3P2 528 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 ZNF229Q9UJW7 825 aa13.32□□□□□ -0.28
TRIM28-203ENST00000593582 C11orf98E9PRG8 122 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 RNF13O43567 381 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 OR5F1O95221 314 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 CRYAAP02489 173 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 HEXAP06865 529 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 UMPSP11172 480 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 COX4I1P13073 169 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 TNFRSF1BP20333 461 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 APOBEC3AP31941 199 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-203ENST00000593582 KDELR2P33947 212 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 ACVR1BP36896 505 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 CAPZA2P47755 286 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 OR1E2P47887 323 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 TUBA1BP68363 451 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 TUBA4AP68366 448 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 CAMK2DQ13557 499 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 CYBRD1Q53TN4 286 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 C11orf71Q6IPW1 123 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 TUBA1AQ71U36 451 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 CCDC36Q8IYA8 594 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 MICU2Q8IYU8 434 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 OR6N1Q8NGY5 312 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 LZICQ8WZA0 190 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 ZNF837Q96EG3 531 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-203ENST00000593582 TPD52L3Q96J77 140 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 KATNB1Q9BVA0 655 aa13.31□□□□□ -0.28
TRIM28-203ENST00000593582 CRNNQ9UBG3 495 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-203ENST00000593582 GDF2Q9UK05 429 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-203ENST00000593582 SHOX2O60902 331 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-203ENST00000593582 NDUFS7O75251 213 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 LY6G6DO95868 133 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 IFNGR1P15260 489 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 CBR1P16152 277 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 RBM34P42696 430 aaKnown RBP13.3□□□□□ -0.28
TRIM28-203ENST00000593582 CSNK1A1P48729 337 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 BIDP55957 195 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 CHRNB3Q05901 458 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 ZP4Q12836 540 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 PIN1Q13526 163 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-203ENST00000593582 RAB35Q15286 201 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 PHYHD1Q5SRE7 291 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 NHLRC1Q6VVB1 395 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 SPATA21Q7Z572 469 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 LRRC17Q8N6Y2 441 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms