RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 GLYATQ6IB77 296 aa13.76□□□□□ -0.21
LIG3-215ENST00000592690 HMBOX1Q6NT76 420 aa13.76□□□□□ -0.21
LIG3-215ENST00000592690 SSX8Q7RTT4 187 aa13.76□□□□□ -0.21
LIG3-215ENST00000592690 PXKQ7Z7A4 578 aa13.76□□□□□ -0.21
LIG3-215ENST00000592690 GPR137CQ8N3F9 429 aa13.76□□□□□ -0.21
LIG3-215ENST00000592690 FITM2Q8N6M3 262 aa13.76□□□□□ -0.21
LIG3-215ENST00000592690 PIK3C3Q8NEB9 887 aa13.76□□□□□ -0.21
LIG3-215ENST00000592690 ZNF837Q96EG3 531 aaPredicted RBP13.76□□□□□ -0.21
LIG3-215ENST00000592690 NELFAQ9H3P2 528 aa13.76□□□□□ -0.21
LIG3-215ENST00000592690 GPR35Q9HC97 309 aa13.76□□□□□ -0.21
LIG3-215ENST00000592690 MAN2C1Q9NTJ4 1040 aa13.76□□□□□ -0.21
LIG3-215ENST00000592690 BEX4Q9NWD9 120 aaPredicted RBP13.76□□□□□ -0.21
LIG3-215ENST00000592690 TAS2R5Q9NYW4 299 aa13.76□□□□□ -0.21
LIG3-215ENST00000592690 RHCGQ9UBD6 479 aa13.76□□□□□ -0.21
LIG3-215ENST00000592690 AMDHD2Q9Y303 409 aa13.76□□□□□ -0.21
LIG3-215ENST00000592690 MAP1AP78559 2803 aaPredicted RBP13.75□□□□□ -0.21
LIG3-215ENST00000592690 SHISA9B4DS77 424 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 RPL36A-HNRNPH2H7BZ11 118 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 M0R1B8 84 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 M0R3G1 203 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 FFAR1O14842 300 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 OR7A10O76100 309 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 OR6A2O95222 327 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 FAM107AO95990 144 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 IFNGR1P15260 489 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 TCN1P20061 433 aaPredicted RBP13.75□□□□□ -0.21
LIG3-215ENST00000592690 HOXC12P31275 282 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 LSM11P83369 360 aaKnown RBP eCLIP13.75□□□□□ -0.21
LIG3-215ENST00000592690 ST3GAL3Q11203 375 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 ZP4Q12836 540 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 CEACAM16Q2WEN9 425 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 GKAP1Q5VSY0 366 aaPredicted RBP13.75□□□□□ -0.21
LIG3-215ENST00000592690 FKBP9P1Q75LS8 142 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 NANOGNBQ7Z5D8 188 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 TSEN54Q7Z6J9 526 aaKnown RBP13.75□□□□□ -0.21
LIG3-215ENST00000592690 OFCC1Q8IZS5 231 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 FAM86B1Q8N7N1 296 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 IGFBPL1Q8WX77 278 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 BCL2L2Q92843 193 aaPredicted RBP13.75□□□□□ -0.21
LIG3-215ENST00000592690 BOD1Q96IK1 185 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 MED31Q9Y3C7 131 aa13.75□□□□□ -0.21
LIG3-215ENST00000592690 USF3Q68DE3 2245 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 A0A096LPE4 126 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 A0A1W2PPZ6 126 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 RNF13O43567 381 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 SEC14L2O76054 403 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 PRSS23O95084 383 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 HSD17B1P14061 328 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 CD40P25942 277 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 MSX2P35548 267 aaPredicted RBP13.74□□□□□ -0.21
LIG3-215ENST00000592690 SH3BGRP55822 239 aaPredicted RBP13.74□□□□□ -0.21
LIG3-215ENST00000592690 BIDP55957 195 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 PRPS1P60891 318 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 TUBA1BP68363 451 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 TUBA4AP68366 448 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 ARF1P84077 181 aaKnown RBP13.74□□□□□ -0.21
LIG3-215ENST00000592690 CAMK2DQ13557 499 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 FXNQ16595 210 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 ZNF672Q499Z4 452 aaPredicted RBP13.74□□□□□ -0.21
LIG3-215ENST00000592690 KLHL17Q6TDP4 642 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 KLHL24Q6TFL4 600 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 TMEM108Q6UXF1 575 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 TUBA1AQ71U36 451 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 SLC35D2Q76EJ3 337 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 KRTAP1-3Q8IUG1 177 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 C20orf196Q8IYI0 205 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 PIAS4Q8N2W9 510 aaPredicted RBP13.74□□□□□ -0.21
LIG3-215ENST00000592690 ZNF611Q8N823 705 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 CCDC197Q8NCU1 140 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 ANKK1Q8NFD2 765 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 PIGTQ969N2 578 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 SGTBQ96EQ0 304 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 HS6ST2Q96MM7 605 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 CDRT15Q96T59 188 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 PIP5K1AQ99755 562 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 CRLF2Q9HC73 371 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 CD300AQ9UGN4 299 aa13.74□□□□□ -0.21
LIG3-215ENST00000592690 BLOC1S5-TXNDC5H3BN57 136 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 SMPD2O60906 423 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 IGF2P01344 180 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 HIST1H2ABP04908 130 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 FUT1P19526 365 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 PTAFRP25105 342 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 CDH11P55287 796 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 MXRA7P84157 204 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 RPL18Q07020 188 aaKnown RBP13.73□□□□□ -0.21
LIG3-215ENST00000592690 MELKQ14680 651 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 KRT72Q14CN4 511 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 ANKRD16Q6P6B7 361 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 HIST3H2AQ7L7L0 130 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 MEX3DQ86XN8 651 aaKnown RBP13.73□□□□□ -0.21
LIG3-215ENST00000592690 DEFB107AQ8IZN7 70 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 HIST1H2ACQ93077 130 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 FBXW5Q969U6 566 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 FNDC11Q9BVV2 318 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 DCAF13Q9NV06 445 aaKnown RBP13.73□□□□□ -0.21
LIG3-215ENST00000592690 RPS6KA6Q9UK32 745 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 ADAM21Q9UKJ8 722 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 ENPP4Q9Y6X5 453 aa13.73□□□□□ -0.21
LIG3-215ENST00000592690 V9GYQ6 96 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms