RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 F13BP05160 661 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 LYNP07948 512 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 FAM87AP0C7U9 286 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 PIPP12273 146 aaPredicted RBP13.65□□□□□ -0.22
SS18-215ENST00000580642 FCGR2AP12318 317 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 HIST1H1CP16403 213 aaKnown RBP13.65□□□□□ -0.22
SS18-215ENST00000580642 CRHBPP24387 322 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 BLVRAP53004 296 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.65□□□□□ -0.22
SS18-215ENST00000580642 LGALS3BPQ08380 585 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 C19orf57Q0VDD7 668 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 KRR1Q13601 381 aaKnown RBP13.65□□□□□ -0.22
SS18-215ENST00000580642 SLC17A1Q14916 467 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 RNPS1Q15287 305 aaKnown RBP13.65□□□□□ -0.22
SS18-215ENST00000580642 SLC35D3Q5M8T2 416 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 ZNF324BQ6AW86 544 aaPredicted RBP13.65□□□□□ -0.22
SS18-215ENST00000580642 ABLIM2Q6H8Q1 611 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 LAIR2Q6ISS4 152 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 SLC35D2Q76EJ3 337 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 CXXC5Q7LFL8 322 aaKnown RBP13.65□□□□□ -0.22
SS18-215ENST00000580642 JAZF1Q86VZ6 243 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 CCDC103Q8IW40 242 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 UBQLNLQ8IYU4 475 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 GHDCQ8N2G8 530 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 TEX19Q8NA77 164 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 LSM14AQ8ND56 463 aaKnown RBP13.65□□□□□ -0.22
SS18-215ENST00000580642 NPEPL1Q8NDH3 523 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 OR52E2Q8NGJ4 325 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 OR6X1Q8NH79 312 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 CNIH3Q8TBE1 160 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 UBE2FQ969M7 185 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 Q96M85 177 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 GPR137Q96N19 417 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 TSPAN32Q96QS1 320 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 IL4I1Q96RQ9 567 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 ALG12Q9BV10 488 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 SLC25A18Q9H1K4 315 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 DUSP21Q9H596 190 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 HAO2Q9NYQ3 351 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 SEC14L4Q9UDX3 406 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 NPIPA1Q9UND3 350 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 MOKQ9UQ07 419 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 ADAM18Q9Y3Q7 739 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 TNRC6AQ8NDV7 1962 aaKnown RBP13.65□□□□□ -0.22
SS18-215ENST00000580642 TEX13CA0A0J9YWL9 993 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 CLCA1A8K7I4 914 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 AHRRA9YTQ3 701 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 C11orf98E9PRG8 122 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 ERVH48-1M5A8F1 160 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 SMAD9O15198 467 aaKnown RBP13.64□□□□□ -0.23
SS18-215ENST00000580642 RENP00797 406 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 HOXD4P09016 255 aaPredicted RBP13.64□□□□□ -0.23
SS18-215ENST00000580642 HTR1FP30939 366 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 PTGER4P35408 488 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 POU3F1Q03052 451 aaPredicted RBP13.64□□□□□ -0.23
SS18-215ENST00000580642 KLRB1Q12918 225 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 GXYLT1Q4G148 440 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 SLC35F1Q5T1Q4 408 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 IGFN1Q86VF2 1251 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 CPOQ8IVL8 374 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 SLC37A3Q8NCC5 494 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 ASB10Q8WXI3 467 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 INTS12Q96CB8 462 aaKnown RBP13.64□□□□□ -0.23
SS18-215ENST00000580642 ZNF582Q96NG8 517 aaPredicted RBP13.64□□□□□ -0.23
SS18-215ENST00000580642 SRXN1Q9BYN0 137 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 NMNAT2Q9BZQ4 307 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 TSPAN10Q9H1Z9 355 aaPredicted RBP13.64□□□□□ -0.23
SS18-215ENST00000580642 HINT3Q9NQE9 182 aaKnown RBP13.64□□□□□ -0.23
SS18-215ENST00000580642 GLRX2Q9NS18 164 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 VSX1Q9NZR4 365 aaPredicted RBP13.64□□□□□ -0.23
SS18-215ENST00000580642 KLHL9Q9P2J3 617 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 SPRR3Q9UBC9 169 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 WARS2Q9UGM6 360 aaKnown RBP13.64□□□□□ -0.23
SS18-215ENST00000580642 PSORS1C1Q9UIG5 152 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 ZMIZ1Q9ULJ6 1067 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 RCE1Q9Y256 329 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 LIPGQ9Y5X9 500 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 DMXL2Q8TDJ6 3036 aa13.64□□□□□ -0.23
SS18-215ENST00000580642 ZFHX4Q86UP3 3567 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 PRSS37A4D1T9 235 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 NPIPA2E9PIF3 369 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 NPIPA3F8WFD2 350 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 TRAF3IP2O43734 574 aaPredicted RBP13.63□□□□□ -0.23
SS18-215ENST00000580642 ENTPD6O75354 484 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 IFNGR1P15260 489 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 CRABP1P29762 137 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 ACVR1BP36896 505 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 SLC15A1P46059 708 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 TUBA4AP68366 448 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 SLC35A2P78381 396 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 POU4F2Q12837 409 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 CRMP1Q14194 572 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 NADK2Q4G0N4 442 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 KLHL22Q53GT1 634 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 MESTQ5EB52 335 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 LCN1P1Q5VSP4 162 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 DNM1P34Q6PK57 102 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 CREB3L2Q70SY1 520 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 MEPCEQ7L2J0 689 aaKnown RBP13.63□□□□□ -0.23
SS18-215ENST00000580642 FCRLAQ7L513 359 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms