RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ACANP16112 2415 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 DPRXA6NFQ7 191 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 LRRN3E7EW58 273 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 KPNA4O00629 521 aaPredicted RBP11.75□□□□□ -0.53
CLK3-216ENST00000564468 ARHGEF9O43307 516 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 SHOX2O60902 331 aaPredicted RBP11.75□□□□□ -0.53
CLK3-216ENST00000564468 SMPD2O60906 423 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 UPK3AO75631 287 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 FAM107AO95990 144 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 PLAUP00749 431 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 SERPINA1P01009 418 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 CDH2P19022 906 aaPredicted RBP11.75□□□□□ -0.53
CLK3-216ENST00000564468 UBE2NP61088 152 aaKnown RBP11.75□□□□□ -0.53
CLK3-216ENST00000564468 MXRA7P84157 204 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 ROR2Q01974 943 aaKnown RBP11.75□□□□□ -0.53
CLK3-216ENST00000564468 SAMD4BQ5PRF9 694 aaKnown RBP11.75□□□□□ -0.53
CLK3-216ENST00000564468 GLYATQ6IB77 296 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 C16orf89Q6UX73 402 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 SEZ6L2Q6UXD5 910 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 NANOGNBQ7Z5D8 188 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 TSPYL5Q86VY4 417 aaPredicted RBP11.75□□□□□ -0.53
CLK3-216ENST00000564468 CYP4Z1Q86W10 505 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 PGAM4Q8N0Y7 254 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 LRRC75A-AS1Q8N1F1 130 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 OR1K1Q8NGR3 316 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 MAGEE2Q8TD90 523 aaPredicted RBP11.75□□□□□ -0.53
CLK3-216ENST00000564468 TMEM171Q8WVE6 324 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 SGTBQ96EQ0 304 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 ADAD1Q96M93 576 aaKnown RBP11.75□□□□□ -0.53
CLK3-216ENST00000564468 OR2M2Q96R28 347 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 FNDC11Q9BVV2 318 aa11.75□□□□□ -0.53
CLK3-216ENST00000564468 SAMD4AQ9UPU9 718 aaKnown RBP11.75□□□□□ -0.53
CLK3-216ENST00000564468 USF3Q68DE3 2245 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 SLC35F4A4IF30 521 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 C11orf98E9PRG8 122 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 M0R1B8 84 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 ABCD4O14678 606 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 RNF13O43567 381 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 HPRP00739 348 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 ASAH2BP0C7U1 165 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 FOSL1P15407 271 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 FUT1P19526 365 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 ZNF83P51522 516 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 KRT72Q14CN4 511 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 TRAM2Q15035 370 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 SPATS1Q496A3 300 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 ZNF672Q499Z4 452 aaPredicted RBP11.74□□□□□ -0.53
CLK3-216ENST00000564468 SHEQ5VZ18 495 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 ANKRD16Q6P6B7 361 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 VTCN1Q7Z7D3 282 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 NKAIN4Q8IVV8 208 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 CCDC36Q8IYA8 594 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 OFCC1Q8IZS5 231 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 TMEM123Q8N131 208 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 WDR31Q8NA23 367 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 TMEM255BQ8WV15 326 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 CXorf56Q9H5V9 222 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 GPR35Q9HC97 309 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 MEPEQ9NQ76 525 aaPredicted RBP11.74□□□□□ -0.53
CLK3-216ENST00000564468 FAIMQ9NVQ4 179 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 NPAP1Q9NZP6 1156 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 A4GNTQ9UNA3 340 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 FBN3Q75N90 2809 aa11.74□□□□□ -0.53
CLK3-216ENST00000564468 A0A1W2PR80 420 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 ZNF99A8MXY4 864 aaPredicted RBP11.73□□□□□ -0.53
CLK3-216ENST00000564468 BLOC1S5-TXNDC5H3BN57 136 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 ENTPD5O75356 428 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 SERPINI2O75830 405 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 OR7A10O76100 309 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 HLA-DOBP13765 273 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 HSD17B1P14061 328 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 CD40P25942 277 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 UGT2B15P54855 530 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 CEACAM16Q2WEN9 425 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 TBRG1Q3YBR2 411 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 SLC35D2Q76EJ3 337 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 RRM2BQ7LG56 351 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 SLC46A3Q7Z3Q1 461 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 HDDC2Q7Z4H3 204 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 C20orf196Q8IYI0 205 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 CDK20Q8IZL9 346 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 RNF113BQ8IZP6 322 aaKnown RBP11.73□□□□□ -0.53
CLK3-216ENST00000564468 PIAS4Q8N2W9 510 aaPredicted RBP11.73□□□□□ -0.53
CLK3-216ENST00000564468 CCDC197Q8NCU1 140 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 OR6N1Q8NGY5 312 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 OR6X1Q8NH79 312 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 LIPHQ8WWY8 451 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 BCL2L2Q92843 193 aaPredicted RBP11.73□□□□□ -0.53
CLK3-216ENST00000564468 HSH2DQ96JZ2 352 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 EMC6Q9BV81 110 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 GORASP2Q9H8Y8 452 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 CRLF2Q9HC73 371 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 ARL8BQ9NVJ2 186 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 MED29Q9NX70 200 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 TAS2R5Q9NYW4 299 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 GMPR2Q9P2T1 348 aaKnown RBP11.73□□□□□ -0.53
CLK3-216ENST00000564468 STX18Q9P2W9 335 aaKnown RBP11.73□□□□□ -0.53
CLK3-216ENST00000564468 EGFL7Q9UHF1 273 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 MAGEL2Q9UJ55 1249 aa11.73□□□□□ -0.53
CLK3-216ENST00000564468 POU2F3Q9UKI9 436 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms