RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 LIPNQ5VXI9 398 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 SLC6A19Q695T7 634 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 OR7E24Q6IFN5 339 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 JAZF1Q86VZ6 243 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 NAXDQ8IW45 347 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 BVESQ8NE79 360 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 FBXW5Q969U6 566 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 ASB16Q96NS5 453 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 TBC1D3DA0A087WVF3 549 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 TBC1D3IA0A087WXS9 549 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 TBC1D3LB9A6J9 549 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 CBX7O95931 251 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 EGFP01133 1207 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 IGKV1D-16P01601 117 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 TBC1D3HP0C7X1 549 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 GTF2F2P13984 249 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 HTRA4P83105 476 aaPredicted RBP12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 KIR2DS3Q14952 304 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 CSRP2Q16527 193 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 C4orf46Q504U0 113 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 YOD1Q5VVQ6 348 aaPredicted RBP12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 DCAF12L2Q5VW00 463 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 FCRL6Q6DN72 434 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 TBC1D3CQ6IPX1 549 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 LRRN1Q6UXK5 716 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 LINC00114Q6XXX2 140 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 DGAT2L6Q6ZPD8 337 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 SLC36A1Q7Z2H8 476 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 ZNF227Q86WZ6 799 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 TBC1D3Q8IZP1 549 aaPredicted RBP12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 MUC20Q8N307 709 aaPredicted RBP12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 OR4D10Q8NGI6 311 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 EVA1AQ9H8M9 152 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 ZNF337Q9Y3M9 751 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 SPTBP11277 2137 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 A0A1B0GTH9 108 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 OR6C74A6NCV1 312 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 H7C417 338 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 CYR61O00622 381 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 FGF2P09038 288 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 PVRP15151 417 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 ACTR1BP42025 376 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 ACTR1AP61163 376 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 PSG6Q00889 435 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 NNATQ16517 81 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 TSSK4Q6SA08 328 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 ENPP7Q6UWV6 458 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 CCL4L1Q8NHW4 92 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 RPS4Y2Q8TD47 263 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 TRIM43Q96BQ3 446 aaPredicted RBP12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 ZFYVE21Q9BQ24 234 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 MFFQ9GZY8 342 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 PRDM9Q9NQV7 894 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 FRRS1LQ9P0K9 344 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 MTFP1Q9UDX5 166 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 PILRAQ9UKJ1 303 aa12.75□□□□□ -0.37
VPS9D1-202ENST00000561976 ARPC3O15145 178 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 XRCC3O43542 346 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 SDC3O75056 442 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 APOC3P02656 99 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 CSF1P09603 554 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 GJA4P35212 333 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 CDKN2AP42771 156 aaKnown RBP12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 MNX1P50219 401 aaPredicted RBP12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 TPMTP51580 245 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 PRMT2P55345 433 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 MAT1AQ00266 395 aaKnown RBP12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 SORDQ00796 357 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 GUCA2AQ02747 115 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 DEFB115Q30KQ5 88 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 C2orf27AQ580R0 203 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 TFAP2EQ6VUC0 442 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 RNF44Q7L0R7 432 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 CDH26Q8IXH8 852 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 ZNF676Q8N7Q3 588 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 LSM14AQ8ND56 463 aaKnown RBP12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 OR51S1Q8NGJ8 323 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 OR8S1Q8NH09 359 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 OR1S1Q8NH92 325 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 DMRTA2Q96SC8 542 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 NMNAT2Q9BZQ4 307 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 SRA1Q9HD15 236 aaKnown RBP12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 GPR160Q9UJ42 338 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 KLHDC2Q9Y2U9 406 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 TRAV8-7A0A075B6U6 113 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 ICAM2P13598 275 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 MNDAP41218 407 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 LINC01590Q5TEZ4 76 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 SPRED2Q7Z698 418 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 KRT77Q7Z794 578 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 LRRTM1Q86UE6 522 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 OR52H1Q8NGJ2 320 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 FAM3CQ92520 227 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 RNF166Q96A37 237 aaPredicted RBP12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 LDAHQ9H6V9 325 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 EXO5Q9H790 373 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 STARD5Q9NSY2 213 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 TAS2R8Q9NYW2 309 aa12.74□□□□□ -0.37
VPS9D1-202ENST00000561976 ACTR10Q9NZ32 417 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms