RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SLC22A11Q9NSA0 550 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 RXFP3Q9NSD7 469 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 CGGBP1Q9UFW8 167 aaPredicted RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 SERGEFQ9UGK8 458 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 LAMP5Q9UJQ1 280 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 GPR34Q9UPC5 381 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 HEATR5AQ86XA9 2040 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 DENND4CQ5VZ89 1909 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 A0A1B0GW55 424 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 OR14I1A6ND48 311 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 DUX4L2P0CJ85 424 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 DUX4L3P0CJ86 424 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 DUX4L4P0CJ87 422 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 DUX4L5P0CJ88 424 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 DUX4L6P0CJ89 424 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 DUX4L7P0CJ90 424 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 EPCAMP16422 314 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 CEBPBP17676 345 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 RAB3AP20336 220 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 DLSTP36957 453 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 ACTA2P62736 377 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 ACTG2P63267 376 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 BDH1Q02338 343 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 ARHGAP11AQ6P4F7 1023 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 CMIPQ8IY22 773 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 ZNF578Q96N58 590 aaPredicted RBP10.37□□□□□ -0.75
LDLR-208ENST00000558518 GFI1Q99684 422 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 USB1Q9BQ65 265 aaKnown RBP10.37□□□□□ -0.75
LDLR-208ENST00000558518 CRB3Q9BUF7 120 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 TINAGL1Q9GZM7 467 aaPredicted RBP10.37□□□□□ -0.75
LDLR-208ENST00000558518 MKKSQ9NPJ1 570 aaPredicted RBP10.37□□□□□ -0.75
LDLR-208ENST00000558518 DUX4Q9UBX2 424 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 C17orf113A0A1B0GUU1 675 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 CARNS1A5YM72 827 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 ZNF98A6NK75 572 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 B3GALT2O43825 422 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 FGF17O60258 216 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 KCNJ13O60928 360 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 DBIP07108 87 aaKnown RBP10.37□□□□□ -0.75
LDLR-208ENST00000558518 CST5P28325 142 aaPredicted RBP10.37□□□□□ -0.75
LDLR-208ENST00000558518 PBX2P40425 430 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 POU3F4P49335 361 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 FGL1Q08830 312 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 RUNX2Q13950 521 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 SMAD2Q15796 467 aaKnown RBP10.37□□□□□ -0.75
LDLR-208ENST00000558518 ARMC10Q8N2F6 343 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 TTLQ8NG68 377 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 OR1S2Q8NGQ3 325 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 OR10R2Q8NGX6 335 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 THAP6Q8TBB0 222 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 ALG12Q9BV10 488 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 NPDC1Q9NQX5 325 aaPredicted RBP10.37□□□□□ -0.75
LDLR-208ENST00000558518 FLRT3Q9NZU0 649 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 RP1P56715 2156 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 A0A0B4J2A0 478 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 PRR32B1ATL7 298 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 EIF1AYO14602 144 aaKnown RBP10.37□□□□□ -0.75
LDLR-208ENST00000558518 NDUFB6O95139 128 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 NDUFB2O95178 105 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 RAB3DO95716 219 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 HLA-AP01891 365 aaKnown RBP10.37□□□□□ -0.75
LDLR-208ENST00000558518 CSF2RAP15509 400 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 KCNJ3P48549 501 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 EPHA4P54764 986 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 RPS11P62280 158 aaKnown RBP eCLIP10.37□□□□□ -0.75
LDLR-208ENST00000558518 SWI5Q1ZZU3 235 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 TMEM35AQ53FP2 167 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 IGSF11Q5DX21 431 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 ZNF542PQ5EBM4 170 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 HACD4Q5VWC8 232 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 TMEM64Q6YI46 380 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 ZNF227Q86WZ6 799 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 OR1J2Q8NGS2 313 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 SFXN5Q8TD22 340 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 CCDC3Q9BQI4 270 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 HRH4Q9H3N8 390 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 PRR13Q9NZ81 148 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 SHPKQ9UHJ6 478 aa10.37□□□□□ -0.75
LDLR-208ENST00000558518 KIF26BQ2KJY2 2108 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 PRUNE2Q8WUY3 3088 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 LINC01387J3KSC0 135 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 SOX1O00570 391 aaPredicted RBP10.36□□□□□ -0.75
LDLR-208ENST00000558518 CT62P0C5K7 136 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 OR2T7P0C7T2 308 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 NID1P14543 1247 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 AVPR2P30518 371 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 PRSS3P35030 304 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 ACTR1BP42025 376 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 CAPZA1P52907 286 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 CTXN1P60606 82 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 ACTR1AP61163 376 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 ADAM8P78325 824 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 SERTAD2Q14140 314 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 ELAVL3Q14576 367 aaKnown RBP10.36□□□□□ -0.75
LDLR-208ENST00000558518 C2orf27AQ580R0 203 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 TMEM71Q6P5X7 295 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 C12orf45Q8N5I9 185 aaPredicted RBP10.36□□□□□ -0.75
LDLR-208ENST00000558518 ACBD4Q8NC06 268 aa10.36□□□□□ -0.75
LDLR-208ENST00000558518 OR52R1Q8NGF1 315 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms