RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 AK1P00568 194 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 IVLP07476 585 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 HBQ1P09105 142 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 NCF1P14598 390 aaPredicted RBP3.03□□□□□ -1.92
CD44-235ENST00000532339 CYP11B1P15538 503 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 ZNF24P17028 368 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 ADORA2BP29275 332 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 MDH1P40925 334 aaKnown RBP3.03□□□□□ -1.92
CD44-235ENST00000532339 MAGEA4P43358 317 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 NPY2RP49146 381 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 NUCB2P80303 420 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 CYCSP99999 105 aaKnown RBP3.03□□□□□ -1.92
CD44-235ENST00000532339 DHODHQ02127 395 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 LOXL1Q08397 574 aaPredicted RBP3.03□□□□□ -1.92
CD44-235ENST00000532339 ELP6Q0PNE2 266 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 SCGB2A2Q13296 93 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 TRADDQ15628 312 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 FAM189A2Q15884 450 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 CARD16Q5EG05 197 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 TEX35Q5T0J7 233 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 ARL6IP6Q8N6S5 226 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 C11orf45Q8TAV5 145 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 RDH11Q8TC12 318 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 ACCSQ96QU6 501 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 SOSTQ9BQB4 213 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 SLC7A5P2Q9GIP4 190 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 DPH5Q9H2P9 285 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 RWDD1Q9H446 243 aaPredicted RBP3.03□□□□□ -1.92
CD44-235ENST00000532339 COQ10BQ9H8M1 238 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 MED20Q9H944 212 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 FANCEQ9HB96 536 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 SLC25A19Q9HC21 320 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 IL1RAPQ9NPH3 570 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 SLC35D1Q9NTN3 355 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 FAM49BQ9NUQ9 324 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 MTRF1LQ9UGC7 380 aaKnown RBP3.03□□□□□ -1.92
CD44-235ENST00000532339 DSCAMO60469 2012 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 SCN2AQ99250 2005 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 A0A096LNT2 108 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 A0A0U1RQV5 110 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 OR5K4A6NMS3 321 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 ZNF724A8MTY0 619 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 A8MU10 97 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 F5H5T6 163 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 SH2D1BO14796 132 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 TSPAN2O60636 221 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 HPP00738 406 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 HPRP00739 348 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 KRT6BP04259 564 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 FCER2P06734 321 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 UQCRHP07919 91 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 PRKACGP22612 351 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 PDHA2P29803 388 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 ACVR1BP36896 505 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 KRT6CP48668 564 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 CRYBA2P53672 197 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 ABCE1P61221 599 aaKnown RBP3.02□□□□□ -1.93
CD44-235ENST00000532339 RPS4XP62701 263 aaKnown RBP3.02□□□□□ -1.93
CD44-235ENST00000532339 RBBP4Q09028 425 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 PDZK1IP1Q13113 114 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 NME3Q13232 169 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 SLC17A1Q14916 467 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 GOLGA7BQ2TAP0 167 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 HSP90AA5PQ58FG0 334 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 KPRPQ5T749 579 aaPredicted RBP3.02□□□□□ -1.93
CD44-235ENST00000532339 PNCKQ6P2M8 343 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 WDR59Q6PJI9 974 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 CERS6Q6ZMG9 384 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 HSCBQ8IWL3 235 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 FBXL16Q8N461 479 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 GVQW1Q8N7I0 195 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 C12orf29Q8N999 325 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 ZNF540Q8NDQ6 660 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 ZNF397Q8NF99 534 aaPredicted RBP3.02□□□□□ -1.93
CD44-235ENST00000532339 OR11G2Q8NGC1 345 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 OR5B17Q8NGF7 314 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 OR52K2Q8NGK3 314 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 OR10G7Q8NGN6 311 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 TMEM37Q8WXS4 190 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 MCHR2Q969V1 340 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 OR2M4Q96R27 311 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 ANGPTL4Q9BY76 406 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 SLITRK2Q9H156 845 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 PLEKHA3Q9HB20 300 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 MRM3Q9HC36 420 aaKnown RBP3.02□□□□□ -1.93
CD44-235ENST00000532339 ABCC13Q9NSE7 274 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 DDX19AQ9NUU7 478 aaKnown RBP3.02□□□□□ -1.93
CD44-235ENST00000532339 TEX10Q9NXF1 929 aaPredicted RBP3.02□□□□□ -1.93
CD44-235ENST00000532339 SLC17A4Q9Y2C5 497 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 SLC6A5Q9Y345 797 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 ZNF175Q9Y473 711 aa3.02□□□□□ -1.93
CD44-235ENST00000532339 PHF3Q92576 2039 aaKnown RBP3.02□□□□□ -1.93
CD44-235ENST00000532339 A0A087WZY1 265 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 IGHV3-38A0A0C4DH36 116 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 FAM230AA0A1W2PPH8 454 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 MPTX1A8MV57 137 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 E9PMD0 336 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 PDXKO00764 312 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 CPLX1O14810 134 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 SNAP91O60641 907 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms