RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 OR2G2Q8NGZ5 317 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 SPATA3Q8NHX4 192 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 FGF14Q92915 247 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 RACGAP1Q9H0H5 632 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 NEUROG2Q9H2A3 272 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 OR51J1Q9H342 316 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 IGKV3D-20A0A0C4DH25 116 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 C12orf77C9JDV5 145 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 RAB29O14966 203 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 SOX15O60248 233 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 GZMAP12544 262 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 CMA1P23946 247 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 DLX1P56177 255 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 ERVK-25P63136 954 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 GPR157Q5UAW9 335 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 ZNF544Q6NX49 715 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 ZNF620Q6ZNG0 422 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 ZBED8Q8IZ13 594 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 ZNF557Q8N988 423 aaPredicted RBP5.3□□□□□ -1.56
NUP54-215ENST00000514313 TSEN15Q8WW01 171 aaKnown RBP5.3□□□□□ -1.56
NUP54-215ENST00000514313 ACOT11Q8WXI4 607 aaPredicted RBP5.3□□□□□ -1.56
NUP54-215ENST00000514313 NRGNQ92686 78 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 MARC2Q969Z3 335 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 ATP5SQ99766 215 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 SH3GL1Q99961 368 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 PTTG3PQ9NZH4 202 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 LSM7Q9UK45 103 aaKnown RBP5.3□□□□□ -1.56
NUP54-215ENST00000514313 PSME2Q9UL46 239 aa5.3□□□□□ -1.56
NUP54-215ENST00000514313 RAI1Q7Z5J4 1906 aaPredicted RBP5.3□□□□□ -1.56
NUP54-215ENST00000514313 FANCIQ9NVI1 1328 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 GOLGA6L7A0A1B0GV03 622 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 OR2F2O95006 317 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 TCN1P20061 433 aaPredicted RBP5.29□□□□□ -1.56
NUP54-215ENST00000514313 NPBWR2P48146 333 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 CCNHP51946 323 aaPredicted RBP5.29□□□□□ -1.56
NUP54-215ENST00000514313 GPX6P59796 221 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 SLC1A5Q15758 541 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 SCD5Q86SK9 330 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 MFSD6LQ8IWD5 586 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 OR6C4Q8NGE1 309 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 FANK1Q8TC84 345 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 ARPC1AQ92747 370 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 C16orf74Q96GX8 76 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 SLC29A1Q99808 456 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 AUNIPQ9H7T9 357 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 MRPL47Q9HD33 250 aaKnown RBP5.29□□□□□ -1.56
NUP54-215ENST00000514313 CALYQ9NYX4 217 aa5.29□□□□□ -1.56
NUP54-215ENST00000514313 THSD7BQ9C0I4 1608 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 SMCO2A6NFE2 343 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 CASC3O15234 703 aaKnown RBP5.28□□□□□ -1.56
NUP54-215ENST00000514313 FGGP02679 453 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 COX7A1P24310 79 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 RRM2P31350 389 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 BTCP35070 178 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 RORAP35398 523 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 TFPI2P48307 235 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 TMED10P49755 219 aaKnown RBP5.28□□□□□ -1.56
NUP54-215ENST00000514313 TAS2R19P59542 299 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 ARFRP1Q13795 201 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 CYTH1Q15438 398 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 ZNF239Q16600 458 aaKnown RBP5.28□□□□□ -1.56
NUP54-215ENST00000514313 SCARA5Q6ZMJ2 495 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 LHFPL3Q86UP9 236 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 C11orf42Q8N5U0 333 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 LINC00612Q8N6U2 182 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 CCDC126Q96EE4 140 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 TMEM246Q9BRR3 403 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 HES7Q9BYE0 225 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 OR51M1Q9H341 326 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 SLC25A22Q9H936 323 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 PLGRKTQ9HBL7 147 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 FGF20Q9NP95 211 aaPredicted RBP5.28□□□□□ -1.56
NUP54-215ENST00000514313 IL26Q9NPH9 171 aa5.28□□□□□ -1.56
NUP54-215ENST00000514313 NAP1L2Q9ULW6 460 aaPredicted RBP5.28□□□□□ -1.56
NUP54-215ENST00000514313 SRSF10O75494 262 aaKnown RBP5.27□□□□□ -1.57
NUP54-215ENST00000514313 KLK2P20151 261 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 ZBTB25P24278 435 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 FMO3P31513 532 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 RBMXP38159 391 aaKnown RBP5.27□□□□□ -1.57
NUP54-215ENST00000514313 NAA10P41227 235 aaPredicted RBP5.27□□□□□ -1.57
NUP54-215ENST00000514313 RGRP47804 291 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 RAB10P61026 200 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 C9orf135Q5VTT2 229 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 TMEM53Q6P2H8 277 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 TGIF2LYQ8IUE0 185 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 KATNAL2Q8IYT4 538 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 FBXL16Q8N461 479 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 OR4A4PQ8NGN8 299 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 NEIL3Q8TAT5 605 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 DCUN1D4Q92564 292 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 PEX13Q92968 403 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 RARRES2Q99969 163 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 KCTD14Q9BQ13 255 aaPredicted RBP5.27□□□□□ -1.57
NUP54-215ENST00000514313 RIOK2Q9BVS4 552 aaKnown RBP5.27□□□□□ -1.57
NUP54-215ENST00000514313 SIAEQ9HAT2 523 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 CLCF1Q9UBD9 225 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 ZNF256Q9Y2P7 627 aaPredicted RBP5.27□□□□□ -1.57
NUP54-215ENST00000514313 INSRP06213 1382 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 TNRQ92752 1358 aa5.27□□□□□ -1.57
NUP54-215ENST00000514313 PSMB11A5LHX3 300 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms