RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 BHLHE40O14503 412 aa7.58□□□□□ -1.2
USP54-215ENST00000497106 PRKNO60260 465 aaPredicted RBP7.58□□□□□ -1.2
USP54-215ENST00000497106 KLF7O75840 302 aaPredicted RBP7.58□□□□□ -1.2
USP54-215ENST00000497106 PMS2P2O95744 297 aa7.58□□□□□ -1.2
USP54-215ENST00000497106 BGLAPP02818 100 aa7.58□□□□□ -1.2
USP54-215ENST00000497106 ZNF12P17014 697 aa7.58□□□□□ -1.2
USP54-215ENST00000497106 DNASE1L1P49184 302 aa7.58□□□□□ -1.2
USP54-215ENST00000497106 PPP3R1P63098 170 aa7.58□□□□□ -1.2
USP54-215ENST00000497106 ADAM8P78325 824 aa7.58□□□□□ -1.2
USP54-215ENST00000497106 SLC10A1Q14973 349 aa7.58□□□□□ -1.2
USP54-215ENST00000497106 RPL22L1Q6P5R6 122 aaKnown RBP7.58□□□□□ -1.2
USP54-215ENST00000497106 GHDCQ8N2G8 530 aa7.58□□□□□ -1.2
USP54-215ENST00000497106 PRSS33Q8NF86 280 aa7.58□□□□□ -1.2
USP54-215ENST00000497106 KTI12Q96EK9 354 aaPredicted RBP7.58□□□□□ -1.2
USP54-215ENST00000497106 MMP27Q9H306 513 aa7.58□□□□□ -1.2
USP54-215ENST00000497106 NRIP3Q9NQ35 241 aa7.58□□□□□ -1.2
USP54-215ENST00000497106 C20orf141Q9NUB4 165 aa7.58□□□□□ -1.2
USP54-215ENST00000497106 MRPS18AQ9NVS2 196 aaKnown RBP7.58□□□□□ -1.2
USP54-215ENST00000497106 KLHL9Q9P2J3 617 aa7.58□□□□□ -1.2
USP54-215ENST00000497106 TECTAO75443 2155 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 CABIN1Q9Y6J0 2220 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 METTL15A6NJ78 407 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 TMEM229AB2RXF0 380 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 FAM25AB3EWG3 89 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 FAM25CB3EWG5 89 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 FAM25GB3EWG6 89 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 MKRN2OSH3BPM6 223 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 SLC16A7O60669 478 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 PTP4A3O75365 173 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 EPPINO95925 133 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 LCKP06239 509 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 SPI1P17947 270 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 RGS6P49758 472 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 FOXC1Q12948 553 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 FAM189A2Q15884 450 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 ACKR1Q16570 336 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 PAQR6Q6TCH4 344 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 UBQLNLQ8IYU4 475 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 ZNF671Q8TAW3 534 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 Q96M85 177 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 NMNAT3Q96T66 252 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 SF3B5Q9BWJ5 86 aaKnown RBP7.57□□□□□ -1.2
USP54-215ENST00000497106 TCF7L1Q9HCS4 588 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 TBCCD1Q9NVR7 557 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 UPB1Q9UBR1 384 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 ZNF346Q9UL40 294 aaKnown RBP7.57□□□□□ -1.2
USP54-215ENST00000497106 UNC13CQ8NB66 2214 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 A0A1W2PQ72 361 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 PRSS37A4D1T9 235 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 GFRA3O60609 400 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 SBK2P0C263 348 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 HIST1H1CP16403 213 aaKnown RBP7.57□□□□□ -1.2
USP54-215ENST00000497106 HOXD11P31277 338 aaPredicted RBP7.57□□□□□ -1.2
USP54-215ENST00000497106 SLC25A53Q5H9E4 307 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 ZNF766Q5HY98 468 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 ZNF704Q6ZNC4 412 aaPredicted RBP7.57□□□□□ -1.2
USP54-215ENST00000497106 ADGRG3Q86Y34 549 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 KLBQ86Z14 1044 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 ZNF100Q8IYN0 542 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 C15orf40Q8WUR7 153 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 NKD1Q969G9 470 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 ZNF426Q9BUY5 554 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 MRI1Q9BV20 369 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 CCDC59Q9P031 241 aaKnown RBP7.57□□□□□ -1.2
USP54-215ENST00000497106 NPIPB13A6NJU9 1138 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 NPIPB4C9JG80 1138 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 LOC110117498-PIK3R3F6TDL0 507 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 MAGEB3O15480 346 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 KLF4O43474 513 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 EPHA2P29317 976 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 C21orf33P30042 268 aaPredicted RBP7.57□□□□□ -1.2
USP54-215ENST00000497106 GABRA5P31644 462 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 EIF1AXP47813 144 aaKnown RBP7.57□□□□□ -1.2
USP54-215ENST00000497106 ENTPD1P49961 510 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 PPIAP62937 165 aaKnown RBP7.57□□□□□ -1.2
USP54-215ENST00000497106 GALEQ14376 348 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 DEFB109BQ30KR1 87 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 PLPPR5Q32ZL2 321 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 CCDC58Q4VC31 144 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 TUBA3EQ6PEY2 450 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 SLC46A3Q7Z3Q1 461 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 MDGA2Q7Z553 956 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 PM20D2Q8IYS1 436 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 GATAD2BQ8WXI9 593 aa7.57□□□□□ -1.2
USP54-215ENST00000497106 ZMAT5Q9UDW3 170 aaKnown RBP7.57□□□□□ -1.2
USP54-215ENST00000497106 MRPS18CQ9Y3D5 142 aaKnown RBP7.57□□□□□ -1.2
USP54-215ENST00000497106 C2orf72A6NCS6 295 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 TXNDC12O95881 172 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 CELP19835 753 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 PYCR1P32322 319 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 BIDP55957 195 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 DDI2Q5TDH0 399 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 ZNF322Q6U7Q0 402 aaPredicted RBP7.56□□□□□ -1.2
USP54-215ENST00000497106 IGF2-ASQ6U949 168 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 LINC00114Q6XXX2 140 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 LINC00299Q6ZSB3 139 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 TMPRSS7Q7RTY8 843 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 SPRYD4Q8WW59 207 aaPredicted RBP7.56□□□□□ -1.2
USP54-215ENST00000497106 ACOT12Q8WYK0 555 aa7.56□□□□□ -1.2
USP54-215ENST00000497106 FGF11Q92914 225 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms