RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SLC43A1O75387 559 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 C8BP07358 591 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 APOBEC3AP31941 199 aaPredicted RBP12.25□□□□□ -0.45
UPF3A-204ENST00000475218 SH3BGRP55822 239 aaPredicted RBP12.25□□□□□ -0.45
UPF3A-204ENST00000475218 NCALDP61601 193 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 NAAAQ02083 359 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 HGFACQ04756 655 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 C1DQ13901 141 aaKnown RBP12.25□□□□□ -0.45
UPF3A-204ENST00000475218 TRMT5Q32P41 509 aaKnown RBP12.25□□□□□ -0.45
UPF3A-204ENST00000475218 ENTPD8Q5MY95 495 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 HMBOX1Q6NT76 420 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 ZNF613Q6PF04 617 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 RANBP3LQ86VV4 465 aaPredicted RBP12.25□□□□□ -0.45
UPF3A-204ENST00000475218 C20orf196Q8IYI0 205 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 DEPDC4Q8N2C3 294 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 ZNF525Q8N782 197 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 SCAIQ8N9R8 606 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 RNF217Q8TC41 542 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 ADAD1Q96M93 576 aaKnown RBP12.25□□□□□ -0.45
UPF3A-204ENST00000475218 ZNF317Q96PQ6 595 aaPredicted RBP12.25□□□□□ -0.45
UPF3A-204ENST00000475218 ZNF426Q9BUY5 554 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 KATNB1Q9BVA0 655 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 PCDHAC1Q9H158 963 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 RASSF4Q9H2L5 321 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 NOX3Q9HBY0 568 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 FGFR1OP2Q9NVK5 253 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 CORINQ9Y5Q5 1042 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 CPSF4LA6NMK7 179 aaKnown RBP12.25□□□□□ -0.45
UPF3A-204ENST00000475218 CHP2O43745 196 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 NUDT6P53370 316 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 POU3F1Q03052 451 aaPredicted RBP12.25□□□□□ -0.45
UPF3A-204ENST00000475218 KLF10Q13118 480 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 VMACQ2NL98 169 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 C3orf36Q3SXR2 165 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 CARD17Q5XLA6 110 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 CCDC80Q76M96 950 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 UEVLDQ8IX04 471 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 FAM169BQ8N8A8 192 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 VANGL1Q8TAA9 524 aaPredicted RBP12.25□□□□□ -0.45
UPF3A-204ENST00000475218 ZNF75AQ96N20 296 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 PRSS27Q9BQR3 290 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 EVA1AQ9H8M9 152 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 SAR1AQ9NR31 198 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 ZNF224Q9NZL3 707 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 CHD3Q12873 2000 aaKnown RBP12.24□□□□□ -0.45
UPF3A-204ENST00000475218 SLC35F4A4IF30 521 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 M0R3G1 203 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 UBE2NP61088 152 aaKnown RBP12.24□□□□□ -0.45
UPF3A-204ENST00000475218 PUDPQ08623 228 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 PMS2P3Q13401 168 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 ADIPOQQ15848 244 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 GPR137CQ8N3F9 429 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 LRRC17Q8N6Y2 441 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 PIK3C3Q8NEB9 887 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 ADAMTS16Q8TE57 1224 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 EPYCQ99645 322 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 CA10Q9NS85 328 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 B3GNT2Q9NY97 397 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 TAS2R5Q9NYW4 299 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 SLC13A4Q9UKG4 626 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 MXRA5Q9NR99 2828 aa12.24□□□□□ -0.45
UPF3A-204ENST00000475218 ZNF99A8MXY4 864 aaPredicted RBP12.23□□□□□ -0.45
UPF3A-204ENST00000475218 IGFBP1P08833 259 aaPredicted RBP12.23□□□□□ -0.45
UPF3A-204ENST00000475218 HOXB1P14653 301 aaPredicted RBP12.23□□□□□ -0.45
UPF3A-204ENST00000475218 NQO1P15559 274 aaKnown RBP12.23□□□□□ -0.45
UPF3A-204ENST00000475218 CBR1P16152 277 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 TNFRSF1BP20333 461 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 MFSD13AQ14CX5 517 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 ZNF74Q16587 644 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 REP15Q6BDI9 236 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 ZNF627Q7L945 461 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 PXKQ7Z7A4 578 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 PATL1Q86TB9 770 aaKnown RBP12.23□□□□□ -0.45
UPF3A-204ENST00000475218 LRRC58Q96CX6 371 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 FBXO17Q96EF6 278 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 SORCS2Q96PQ0 1159 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 ASPNQ9BXN1 380 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 MEPEQ9NQ76 525 aaPredicted RBP12.23□□□□□ -0.45
UPF3A-204ENST00000475218 SLC7A7Q9UM01 511 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 CD5LO43866 347 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 CRLF1O75462 422 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 IDH3GP51553 393 aaPredicted RBP12.23□□□□□ -0.45
UPF3A-204ENST00000475218 IL1RL1Q01638 556 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 CAMK2DQ13557 499 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 RAB35Q15286 201 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 SLC46A3Q7Z3Q1 461 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 MDP1Q86V88 176 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 OR5J2Q8NH18 312 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 C10orf105Q8TEF2 133 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 LRR1Q96L50 414 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 ZNF583Q96ND8 569 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 SELENONQ9NZV5 590 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 NOX1Q9Y5S8 564 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 ATRQ13535 2644 aa12.23□□□□□ -0.45
UPF3A-204ENST00000475218 IGHV2OR16-5A0A0B4J2B6 119 aa12.22□□□□□ -0.45
UPF3A-204ENST00000475218 TRAPPC13A5PLN9 417 aa12.22□□□□□ -0.45
UPF3A-204ENST00000475218 MT-ATP6P00846 226 aa12.22□□□□□ -0.45
UPF3A-204ENST00000475218 HLA-HP01893 362 aa12.22□□□□□ -0.45
UPF3A-204ENST00000475218 CRYAAP02489 173 aa12.22□□□□□ -0.45
UPF3A-204ENST00000475218 FUT4P22083 530 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms