RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ZNF613Q6PF04 617 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 VHLLQ6RSH7 139 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 PATL1Q86TB9 770 aaKnown RBP13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 RBM45Q8IUH3 476 aaKnown RBP13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 SLC30A8Q8IWU4 369 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 TMEM123Q8N131 208 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 SCAIQ8N9R8 606 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 OR4D11Q8NGI4 311 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 TAMM41Q96BW9 452 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 SLC41A3Q96GZ6 507 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 ZNF317Q96PQ6 595 aaPredicted RBP13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 KATNB1Q9BVA0 655 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 MED29Q9NX70 200 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 MRPL39Q9NYK5 338 aaKnown RBP13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 CRNNQ9UBG3 495 aaPredicted RBP13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 PMF1-BGLAPU3KQ54 211 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 MXRA5Q9NR99 2828 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 LOC102725191A0A1B0GVB3 256 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 SLC35F4A4IF30 521 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 C11orf98E9PRG8 122 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 H7C417 338 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 CHP2O43745 196 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 FMO6PO60774 539 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 CRYAAP02489 173 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 C8BP07358 591 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 CELA3BP08861 270 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 BMP4P12644 408 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 CD247P20963 164 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 AHCYP23526 432 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 PAX7P23759 505 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 IDH3GP51553 393 aaPredicted RBP13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 ARFIP2P53365 341 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 NAAAQ02083 359 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 PUDPQ08623 228 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 NPRL3Q12980 569 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 CYLC2Q14093 348 aaPredicted RBP13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 MMEL1Q495T6 779 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 RABL3Q5HYI8 236 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 INTS11Q5TA45 600 aaKnown RBP13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 NANOGP8Q6NSW7 305 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 WDR88Q6ZMY6 472 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 ZNF525Q8N782 197 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 ANKK1Q8NFD2 765 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 ADAMTS16Q8TE57 1224 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 TXNDC15Q96J42 360 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 NANOGQ9H9S0 305 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 FGFR1OP2Q9NVK5 253 aa13.67□□□□□ -0.22
CCDC88B-205ENST00000472524 MALRD1Q5VYJ5 2156 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 CUBNO60494 3623 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 ZNF503-AS2A6NEH8 195 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 RNF212BA8MTL3 300 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 ZNF99A8MXY4 864 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 KPNA4O00629 521 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 PLPP3O14495 311 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 TLX2O43763 284 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 LY6HO94772 140 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 IGLV1-44P01699 117 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 THY1P04216 161 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 HOXB1P14653 301 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 CALCRP30988 508 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 CAMK2DQ13557 499 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 VMACQ2NL98 169 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 REP15Q6BDI9 236 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 TTC33Q6PID6 262 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 MYPOPQ86VE0 399 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 TSPYL5Q86VY4 417 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 HIPK1Q86Z02 1210 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 WDFY1Q8IWB7 410 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 C20orf196Q8IYI0 205 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 OR5J2Q8NH18 312 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 B3GAT2Q9NPZ5 323 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 CA10Q9NS85 328 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 SLC7A7Q9UM01 511 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 NOX1Q9Y5S8 564 aa13.66□□□□□ -0.22
CCDC88B-205ENST00000472524 TRAPPC13A5PLN9 417 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 ZNF726A6NNF4 738 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 MRASO14807 208 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 GPRIN2O60269 458 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 OR6A2O95222 327 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 LYPD3O95274 346 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 MT-ATP6P00846 226 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 IGKV3-15P01624 115 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 VIMP08670 466 aaKnown RBP13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 ADORA3P0DMS8 318 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 CBR1P16152 277 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 GZMMP51124 257 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 DSCR9P59020 149 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 SNRPD2P62316 118 aaKnown RBP13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 KLF10Q13118 480 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 SWI5Q1ZZU3 235 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 MST1LQ2TV78 715 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 C3orf36Q3SXR2 165 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 CGB2Q6NT52 195 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 LINC00114Q6XXX2 140 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 MDP1Q86V88 176 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 PHC2Q8IXK0 858 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 OR10H5Q8NGA6 315 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 OR6N1Q8NGY5 312 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 FAM168AQ92567 244 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 LRRC58Q96CX6 371 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms