RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 LRCH1Q9Y2L9 728 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 ADAM18Q9Y3Q7 739 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 SPTA1P02549 2419 aa12.71□□□□□ -0.38
SF3B1-204ENST00000414963 IGHV3-15A0A0B4J1V0 119 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 A6NIZ1 184 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 TTLL8A6PVC2 850 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 CLCA1A8K7I4 914 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 AHCYL1O43865 530 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 PRKYO43930 277 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 IFNGP01579 166 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 EDN3P14138 238 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 IFNGR1P15260 489 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 ZNF43P17038 809 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 NOS3P29474 1203 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 PTGER4P35408 488 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 RAP1BP61224 184 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 RAP1AP62834 184 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 POU3F1Q03052 451 aaPredicted RBP12.7□□□□□ -0.38
SF3B1-204ENST00000414963 C1DQ13901 141 aaKnown RBP12.7□□□□□ -0.38
SF3B1-204ENST00000414963 MAD2L1BPQ15013 274 aaPredicted RBP12.7□□□□□ -0.38
SF3B1-204ENST00000414963 PON3Q15166 354 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 RNPS1Q15287 305 aaKnown RBP12.7□□□□□ -0.38
SF3B1-204ENST00000414963 SNAPC1Q16533 368 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 PRR30Q53SZ7 412 aaPredicted RBP12.7□□□□□ -0.38
SF3B1-204ENST00000414963 SLC35D2Q76EJ3 337 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 ADCK1Q86TW2 530 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 ENTHD1Q8IYW4 607 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 ZIC4Q8N9L1 334 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 OR9K2Q8NGE7 335 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 FNDC9Q8TBE3 224 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 FAM57AQ8TBR7 257 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 TMEM163Q8TC26 289 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 ASB10Q8WXI3 467 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 Q96M85 177 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 FN3KQ9H479 309 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 CALHM2Q9HA72 323 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 CLCF1Q9UBD9 225 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 ING1Q9UK53 422 aaPredicted RBP12.7□□□□□ -0.38
SF3B1-204ENST00000414963 ZNF835Q9Y2P0 537 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 DNAJC13O75165 2243 aa12.7□□□□□ -0.38
SF3B1-204ENST00000414963 ATRXP46100 2492 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 CD8B2A6NJW9 211 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 SLC22A20A6NK97 555 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 RIIAD1A6NNX1 92 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 ZNF724A8MTY0 619 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 GPR171O14626 319 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 ATXN7O15265 892 aaPredicted RBP12.69□□□□□ -0.38
SF3B1-204ENST00000414963 WDR1O75083 606 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 BCL10O95999 233 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 FCGR2AP12318 317 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 GABRA1P14867 456 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 HIST1H1CP16403 213 aaKnown RBP12.69□□□□□ -0.38
SF3B1-204ENST00000414963 CD47Q08722 323 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 RASGEF1BQ0VAM2 473 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 CDK5R2Q13319 367 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 OCLNQ16625 522 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 TMEM201Q5SNT2 666 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 SLC35F1Q5T1Q4 408 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 GTF2IRD2BQ6EKJ0 949 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 PTCHD4Q6ZW05 846 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 HDDC2Q7Z4H3 204 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 GPAT4Q86UL3 456 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 GTF2IRD2Q86UP8 949 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 TCEANCQ8N8B7 351 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 NPEPL1Q8NDH3 523 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 OR6X1Q8NH79 312 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 WNT2BQ93097 391 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 TXNDC15Q96J42 360 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 CNBD2Q96M20 576 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 ADAD1Q96M93 576 aaKnown RBP12.69□□□□□ -0.38
SF3B1-204ENST00000414963 BCO1Q9HAY6 547 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 PNPLA3Q9NST1 481 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 UBAP1Q9NZ09 502 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 KLHL9Q9P2J3 617 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 KLHL13Q9P2N7 655 aa12.69□□□□□ -0.38
SF3B1-204ENST00000414963 EPG5Q9HCE0 2579 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 NBEAQ8NFP9 2946 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 TEX13CA0A0J9YWL9 993 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 CENPBD1B2RD01 187 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 TLX2O43763 284 aaPredicted RBP12.68□□□□□ -0.38
SF3B1-204ENST00000414963 AQP8O94778 261 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 SLC2A10O95528 541 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 TGM6O95932 706 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 PLGP00747 810 aaPredicted RBP12.68□□□□□ -0.38
SF3B1-204ENST00000414963 ZNF3P17036 446 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 ACVR1BP36896 505 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 CDKN2AP42771 156 aaKnown RBP12.68□□□□□ -0.38
SF3B1-204ENST00000414963 IL5RAQ01344 420 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.68□□□□□ -0.38
SF3B1-204ENST00000414963 ITGADQ13349 1161 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 KRR1Q13601 381 aaKnown RBP12.68□□□□□ -0.38
SF3B1-204ENST00000414963 ACSF3Q4G176 576 aaPredicted RBP12.68□□□□□ -0.38
SF3B1-204ENST00000414963 MESTQ5EB52 335 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 AADACL4Q5VUY2 407 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 MEDAGQ5VYS4 303 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 NSUN5P2Q63ZY6 315 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 GFRALQ6UXV0 394 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 OR52E2Q8NGJ4 325 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 OR5M9Q8NGP3 310 aa12.68□□□□□ -0.38
SF3B1-204ENST00000414963 OR4K13Q8NH42 304 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms