RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 PIK3C3Q8NEB9 887 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 ANKK1Q8NFD2 765 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 FBXO17Q96EF6 278 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 ZNF317Q96PQ6 595 aaPredicted RBP16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 NANOGQ9H9S0 305 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 FGFR1OP2Q9NVK5 253 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 MED29Q9NX70 200 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 MRPL39Q9NYK5 338 aaKnown RBP16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 LYPD3O95274 346 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 IGLV1-44P01699 117 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 CELA3BP08861 270 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 NAAAQ02083 359 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 TRMT5Q32P41 509 aaKnown RBP16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 CGB2Q6NT52 195 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 PATL1Q86TB9 770 aaKnown RBP16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 ZNF525Q8N782 197 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 ADAMTS16Q8TE57 1224 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 RHNO1Q9BSD3 238 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 KATNB1Q9BVA0 655 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 ZNF446Q9NWS9 450 aa16.78■□□□□ 0.28
SMARCB1-204ENST00000407422 CHD3Q12873 2000 aaKnown RBP16.77■□□□□ 0.28
SMARCB1-204ENST00000407422 SLC35F4A4IF30 521 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 FXYD1O00168 92 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 PLPP3O14495 311 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 CHP2O43745 196 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 SERPINI2O75830 405 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 LY6HO94772 140 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 CRYAAP02489 173 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 CALCRP30988 508 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 PUDPQ08623 228 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 SWI5Q1ZZU3 235 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 VMACQ2NL98 169 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 SLC30A8Q8IWU4 369 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 C20orf196Q8IYI0 205 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 OR10H5Q8NGA6 315 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 KCNS3Q9BQ31 491 aa16.77■□□□□ 0.27
SMARCB1-204ENST00000407422 A0A096LNT2 108 aa16.76■□□□□ 0.27
SMARCB1-204ENST00000407422 AKAP8O43823 692 aaKnown RBP16.76■□□□□ 0.27
SMARCB1-204ENST00000407422 IGKV3-15P01624 115 aa16.76■□□□□ 0.27
SMARCB1-204ENST00000407422 HOXB1P14653 301 aaPredicted RBP16.76■□□□□ 0.27
SMARCB1-204ENST00000407422 AHCYP23526 432 aa16.76■□□□□ 0.27
SMARCB1-204ENST00000407422 CHRNB3Q05901 458 aa16.76■□□□□ 0.27
SMARCB1-204ENST00000407422 CYLC2Q14093 348 aaPredicted RBP16.76■□□□□ 0.27
SMARCB1-204ENST00000407422 CLEC2AQ6UVW9 174 aa16.76■□□□□ 0.27
SMARCB1-204ENST00000407422 LRRC58Q96CX6 371 aa16.76■□□□□ 0.27
SMARCB1-204ENST00000407422 CA10Q9NS85 328 aa16.76■□□□□ 0.27
SMARCB1-204ENST00000407422 SLC7A7Q9UM01 511 aa16.76■□□□□ 0.27
SMARCB1-204ENST00000407422 USP22Q9UPT9 525 aa16.76■□□□□ 0.27
SMARCB1-204ENST00000407422 NOX1Q9Y5S8 564 aa16.76■□□□□ 0.27
SMARCB1-204ENST00000407422 ZNF99A8MXY4 864 aaPredicted RBP16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 C11orf98E9PRG8 122 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 GPRIN2O60269 458 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 TROVE2P10155 538 aaKnown RBP eCLIP16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 CBR1P16152 277 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 IDH3GP51553 393 aaPredicted RBP16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 ARFIP2P53365 341 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 KLF10Q13118 480 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 CAMK2DQ13557 499 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 C3orf36Q3SXR2 165 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 VHLLQ6RSH7 139 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 CCDC80Q76M96 950 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 PXKQ7Z7A4 578 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 CALHM3Q86XJ0 350 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 FAM169BQ8N8A8 192 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 SLC26A7Q8TE54 656 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 SAR1AQ9NR31 198 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 PMF1-BGLAPU3KQ54 211 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 ATRQ13535 2644 aa16.75■□□□□ 0.27
SMARCB1-204ENST00000407422 TRAPPC13A5PLN9 417 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 KPNA4O00629 521 aaPredicted RBP16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 CH25HO95992 272 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 MT-ATP6P00846 226 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 ADORA3P0DMS8 318 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 BMP4P12644 408 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 PAX7P23759 505 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 SERPINF1P36955 418 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 EFNA4P52798 201 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 HGFACQ04756 655 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 ZNF74Q16587 644 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 INTS11Q5TA45 600 aaKnown RBP16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 REP15Q6BDI9 236 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 MDP1Q86V88 176 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 LRRC17Q8N6Y2 441 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 OR5J2Q8NH18 312 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 NANOS1Q8WY41 292 aaKnown RBP16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 PCDHAC1Q9H158 963 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 ADAM21Q9UKJ8 722 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 KIAA1324LA8MWY0 1029 aaPredicted RBP16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 OR4A8P0C604 315 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 TNFRSF1BP20333 461 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 CAPZA2P47755 286 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 NPRL3Q12980 569 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 ADIPOQQ15848 244 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 MMEL1Q495T6 779 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 TTC33Q6PID6 262 aaPredicted RBP16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 OR8J3Q8NGG0 315 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 LRR1Q96L50 414 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 ECSITQ9BQ95 431 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 TAS2R5Q9NYW4 299 aa16.74■□□□□ 0.27
SMARCB1-204ENST00000407422 FBN1P35555 2871 aaKnown RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms