RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 MAGEH1Q9H213 219 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC25A32Q9H2D1 315 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 PIPOXQ9P0Z9 390 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 CD84Q9UIB8 345 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 ABCA8O94911 1581 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 GOSR1O95249 250 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC35G6P0C7Q6 338 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 KLRC2P26717 231 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 IL2RGP31785 369 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 SPINT3P49223 89 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 CASP6P55212 293 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 JAG1P78504 1218 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 GLB1L2Q8IW92 636 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 OR51A4Q8NGJ6 313 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 OR51A2Q8NGJ7 313 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 OR5D13Q8NGL4 314 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 OR5M1Q8NGP8 315 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 OR51F2Q8NH61 342 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 ADAMTS19Q8TE59 1207 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 SHC3Q92529 594 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 NUS1Q96E22 293 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 PCED1BQ96HM7 432 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 OR5B2Q96R09 309 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 SORT1Q99523 831 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 POP1Q99575 1024 aaKnown RBP7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 NRSN2Q9GZP1 204 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 TDP1Q9NUW8 608 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 NTMQ9P121 344 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 TIMM13Q9Y5L4 95 aaPredicted RBP7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 TGIF2-C20orf24A0A0A6YYL0 155 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 MYOCOSA0A1B0GUC4 107 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC5A10A0PJK1 596 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 GPR39O43194 453 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 POMCP01189 267 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 YBX3P16989 372 aaKnown RBP eCLIP7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 PPP1CBP62140 327 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 UBE2L3P68036 154 aaKnown RBP7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 PAX5Q02548 391 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 IER5Q5VY09 327 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 RNF111Q6ZNA4 994 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 BHLHA15Q7RTS1 189 aaPredicted RBP7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 OR8J1Q8NGP2 316 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 BAALCQ8WXS3 180 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 NEU1Q99519 415 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 HIST1H4GQ99525 98 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 GALNT9Q9HCQ5 603 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 OSGEPQ9NPF4 335 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 MAGI1Q96QZ7 1491 aaPredicted RBP7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 TRBC2A0A5B9 178 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 ZNF785A8K8V0 405 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 SYT5O00445 386 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC17A3O00476 420 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 ARPC3O15145 178 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 PRB2P02812 416 aaPredicted RBP7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 ACP5P13686 325 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 CLCN3P51790 818 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 WNT3P56703 355 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 RPE65Q16518 533 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 ACOT6Q3I5F7 207 aaPredicted RBP7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 NCMAPQ5T1S8 102 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 ASTLQ6HA08 431 aaPredicted RBP7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 TMEM136Q6ZRR5 245 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 SHFQ7M4L6 423 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 C6orf120Q7Z4R8 191 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 ADAMTSL2Q86TH1 951 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 GRAMD2AQ8IUY3 354 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 ACVR1CQ8NER5 493 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 UBE2FQ969M7 185 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 R3HDM4Q96D70 268 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 KCNJ15Q99712 375 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 UBQLN3Q9H347 655 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 OR2W1Q9Y3N9 320 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 HSPE1-MOB4S4R3N1 261 aa7.12□□□□□ -1.27
LIMCH1-201ENST00000313860 C21orf2O43822 256 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 PCDH7O60245 1069 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 PRAMEF4O60810 478 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 GH2P01242 217 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 H2AFB1P0C5Y9 115 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 PYCR1P32322 319 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 ACTR1AP61163 376 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 WSCD1Q658N2 575 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 PLBD1Q6P4A8 553 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 SPNS3Q6ZMD2 512 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 RBFAQ8N0V3 343 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 C4orf36Q96KX1 117 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 RHOVQ96L33 236 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 SMIM7Q9BQ49 75 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 GABARAPL1Q9H0R8 117 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 FBXO44Q9H4M3 255 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 EBF2Q9HAK2 575 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 KCNK6Q9Y257 313 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 COQ4Q9Y3A0 265 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 ZC3H13Q5T200 1668 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 TRAV19A0A0A6YYK7 116 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 TRAV8-2A0A0B4J237 113 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 A0A1W2PQL4 384 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 DUXAA6NLW8 204 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 PRAMEF26H0Y7S4 382 aa7.11□□□□□ -1.27
LIMCH1-201ENST00000313860 ABCB7O75027 752 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms