RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 TFAP2EQ6VUC0 442 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 ZNF561Q8N587 486 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 TMEM178AQ8NBL3 297 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 OR13D1Q8NGV5 346 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 UBTD2Q8WUN7 234 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 SLC35B4Q969S0 331 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 LYRM4Q9HD34 91 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 SPG11Q96JI7 2443 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 ARHGAP32A7KAX9 2087 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 M0R143 59 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 ZNF354AO60765 605 aaPredicted RBP5.66□□□□□ -1.5
VPS13D-201ENST00000011700 CNR2P34972 360 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 ADH7P40394 386 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 CLDN6P56747 220 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 THEM4Q5T1C6 240 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 PLBD1Q6P4A8 553 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 DPPA4Q7L190 304 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 ZNF611Q8N823 705 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 FUBP1Q96AE4 644 aaKnown RBP5.66□□□□□ -1.5
VPS13D-201ENST00000011700 SLC35A4Q96G79 324 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 CAPNS2Q96L46 248 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 DEFB118Q96PH6 123 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 SLC30A3Q99726 388 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 GINS3Q9BRX5 216 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 SPHK2Q9NRA0 654 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 REV1Q9UBZ9 1251 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 DNAJC15Q9Y5T4 150 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 PLXNA3P51805 1871 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 OR8U8P0C7N1 319 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 FABP6P51161 128 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 GDF10P55107 478 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 DEFB134Q4QY38 66 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 TMEM107Q6UX40 140 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 APOOLQ6UXV4 268 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 C17orf107Q6ZR85 190 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 Q6ZVU0 165 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 MBOAT2Q6ZWT7 520 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 ADGRF3Q8IZF5 1079 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 NKX1-2Q9UD57 310 aaPredicted RBP5.66□□□□□ -1.5
VPS13D-201ENST00000011700 APOBEC3BQ9UH17 382 aaKnown RBP5.66□□□□□ -1.5
VPS13D-201ENST00000011700 RPS10-NUDT3A0A1W2PQS6 291 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 SOCS2O14508 198 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 JUNBP17275 347 aaPredicted RBP5.66□□□□□ -1.5
VPS13D-201ENST00000011700 KIR2DS2P43631 304 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 RPS10P46783 165 aaKnown RBP5.66□□□□□ -1.5
VPS13D-201ENST00000011700 PRLHRP49683 370 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 EMP2P54851 167 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 HHEXQ03014 270 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 GTDC1Q4AE62 458 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 TMEM64Q6YI46 380 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 PMEPA1Q969W9 287 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 MRGPRX2Q96LB1 330 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 UBE2ZQ9H832 354 aaPredicted RBP5.66□□□□□ -1.5
VPS13D-201ENST00000011700 TMLHEQ9NVH6 421 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 PCDHGA1Q9Y5H4 931 aa5.66□□□□□ -1.5
VPS13D-201ENST00000011700 RLFQ13129 1914 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 STRCP1A6NGW2 1772 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 IL1R2P27930 398 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 ACVR1BP36896 505 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 RAB9AP51151 201 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 CST9LP1Q5W188 147 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 EIF4E3Q8N5X7 224 aaKnown RBP5.65□□□□□ -1.5
VPS13D-201ENST00000011700 PARP16Q8N5Y8 322 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 OR51A7Q8NH64 312 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 CDS1Q92903 461 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 BSCL2Q96G97 398 aaPredicted RBP5.65□□□□□ -1.5
VPS13D-201ENST00000011700 J3QRK9 145 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 ST8SIA3O43173 380 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 SLC2A1P11166 492 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 MGMTP16455 207 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 CDK5Q00535 292 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 DYRK1AQ13627 763 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 SFRP5Q5T4F7 317 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 OVCH1Q7RTY7 1134 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 KHSRPQ92945 711 aaKnown RBP eCLIP5.65□□□□□ -1.51e-6■■■□□ 16.5
VPS13D-201ENST00000011700 KCNK15Q9H427 330 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 KCNK13Q9HB14 408 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 TAF9BQ9HBM6 251 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.65□□□□□ -1.5
VPS13D-201ENST00000011700 ASIC5Q9NY37 505 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 COPS3Q9UNS2 423 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 TNRC6AQ8NDV7 1962 aaKnown RBP5.65□□□□□ -1.5
VPS13D-201ENST00000011700 TISP43B9A030 160 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 H3BNC9 293 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 DEFA4P12838 97 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 MTHFD2P13995 350 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 SMPD1P17405 629 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 GIFP27352 417 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 SIRPAP78324 504 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 MRPS21P82921 87 aaKnown RBP5.65□□□□□ -1.5
VPS13D-201ENST00000011700 AKR1C1Q04828 323 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 FAM74A3Q4VXF1 159 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 SLC35D2Q76EJ3 337 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 SLC17A9Q9BYT1 436 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 A4GALTQ9NPC4 353 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 EEF1E1-BLOC1S5C9J1V9 151 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 LMNTD1Q8N9Z9 388 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 EMG1Q92979 244 aaKnown RBP5.65□□□□□ -1.5
VPS13D-201ENST00000011700 IL25Q9H293 177 aa5.65□□□□□ -1.5
VPS13D-201ENST00000011700 B3GALT1Q9Y5Z6 326 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms