RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CSNK1A1LQ8N752 337 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 OR1S2Q8NGQ3 325 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 SMIM19Q96E16 107 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 FAM210BQ96KR6 192 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 AMDHD1Q96NU7 426 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 IER2Q9BTL4 223 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 RRAGCQ9HB90 399 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM150CB9EJG8 249 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 NPIPB9F8W1W9 429 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 CYB5BO43169 146 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 CNOT4O95628 575 aaKnown RBP4.34□□□□□ -1.72
SCN1A-220ENST00000641603 CTSHP09668 335 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 BMP5P22003 454 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 ADRA1AP35348 466 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 PCBP4P57723 403 aaKnown RBP4.34□□□□□ -1.72
SCN1A-220ENST00000641603 SLC35A1P78382 337 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 NKAIN1Q4KMZ8 207 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF648Q5T619 568 aaPredicted RBP4.34□□□□□ -1.72
SCN1A-220ENST00000641603 Q6ZRG5 221 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 USP50Q70EL3 339 aaPredicted RBP4.34□□□□□ -1.72
SCN1A-220ENST00000641603 GABRG1Q8N1C3 465 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 ARHGEF39Q8N4T4 335 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 SLC38A9Q8NBW4 561 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 OIT3Q8WWZ8 545 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 EXTL1Q92935 676 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 ACY3Q96HD9 319 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 TEPSINQ96N21 525 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 PKIBQ9C010 78 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 C20orf27Q9GZN8 174 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 EGLN3Q9H6Z9 239 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 Q9N2K0 584 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 MARCH5Q9NX47 278 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 KCNIP1Q9NZI2 227 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 MYH6P13533 1939 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TK1P04183 234 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 LIMK1P53667 647 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 PAFAH1B2P68402 229 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM128Q5BJH2 165 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 FCRLAQ7L513 359 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 KIAA0907Q7Z7F0 614 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 WDTC1Q8N5D0 677 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 BPIFCQ8NFQ6 507 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 GNG13Q9P2W3 67 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 LPAR3Q9UBY5 353 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 AK6Q9Y3D8 172 aaKnown RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 PCDHGC4Q9Y5F7 938 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 PCDHGA1Q9Y5H4 931 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 PDGFBP01127 241 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 GP1BAP07359 652 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SMIM10L2AP0DMW4 78 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SMIM10L2BP0DMW5 78 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 DOC2AQ14183 400 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 OR4A47Q6IF82 309 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM220Q6QAJ8 160 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 LAS2Q8IYD9 372 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 NHLRC2Q8NBF2 726 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 OR4A4PQ8NGN8 299 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SEH1LQ96EE3 360 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 PRDM9Q9NQV7 894 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 UBQLN4Q9NRR5 601 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SLC35D1Q9NTN3 355 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 IFITM5A6NNB3 132 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 UPK3BL1B0FP48 263 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 UPK3BL2E5RIL1 263 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CIDEAO60543 219 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 MAS1P04201 325 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF8P17098 575 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SRMP19623 302 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 GPR4P46093 362 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CCR6P51684 374 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SLC10A1Q14973 349 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 RGMBQ6NW40 437 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF343Q6P1L6 599 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 FIGNL1Q6PIW4 674 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 RBM23Q86U06 439 aaKnown RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CALHM3Q86XJ0 350 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ATOH1Q92858 354 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 C2orf50Q96LR7 162 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TAAR9Q96RI9 348 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ACPTQ9BZG2 426 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 FAM198AQ9UFP1 575 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM235A6NFC5 223 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 HHLA1C9JL84 531 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 DVL2O14641 736 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 PLSCR1O15162 318 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CD99P14209 185 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 GABRR1P24046 479 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ASCL1P50553 236 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 AKR1C2P52895 323 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 FAM26DQ5JW98 314 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 OR5L1Q8NGL2 311 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 OR10D4PQ8NGN7 298 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 OR6K2Q8NGY2 324 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 HUS1BQ8NHY5 278 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 GPR78Q96P69 363 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF230Q9UIE0 474 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 PPT2Q9UMR5 302 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 USP3Q9Y6I4 520 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 RIMBP3CA6NJZ7 1639 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 RIMBP3BA6NNM3 1639 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms