RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 ZNF232Q9UNY5 417 aa14.17□□□□□ -0.14
CLN3-255ENST00000637100 ZNF99A8MXY4 864 aaPredicted RBP14.16□□□□□ -0.14
CLN3-255ENST00000637100 RFXANKO14593 260 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 OR2T1O43869 369 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 SLC43A1O75387 559 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 ERCC1P07992 297 aaPredicted RBP14.16□□□□□ -0.14
CLN3-255ENST00000637100 ZNF35P13682 527 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 PCMT1P22061 227 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 COMPP49747 757 aaPredicted RBP14.16□□□□□ -0.14
CLN3-255ENST00000637100 DSTNP60981 165 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 BST1Q10588 318 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 STX3Q13277 289 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 TRIP10Q15642 601 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 ADRM1Q16186 407 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 CEACAM16Q2WEN9 425 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 SLC9B1Q4ZJI4 515 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 PDCD4Q53EL6 469 aaKnown RBP14.16□□□□□ -0.14
CLN3-255ENST00000637100 FAM69AQ5T7M9 428 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 CDK20Q8IZL9 346 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 PIK3C3Q8NEB9 887 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 SEMA6DQ8NFY4 1073 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 CKAP2Q8WWK9 683 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 MRPL24Q96A35 216 aaKnown RBP14.16□□□□□ -0.14
CLN3-255ENST00000637100 TMEM19Q96HH6 336 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 MAELQ96JY0 434 aaKnown RBP14.16□□□□□ -0.14
CLN3-255ENST00000637100 OR2M2Q96R28 347 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 DENND2DQ9H6A0 471 aaPredicted RBP14.16□□□□□ -0.14
CLN3-255ENST00000637100 ARMC7Q9H6L4 198 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 CRLF2Q9HC73 371 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 SEC14L4Q9UDX3 406 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 USP22Q9UPT9 525 aa14.16□□□□□ -0.14
CLN3-255ENST00000637100 IGKV1D-42A0A075B6H8 117 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 B4DSR2 109 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 SYNGR3O43761 229 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 BCHEP06276 602 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 ZNF14P17017 642 aaPredicted RBP14.15□□□□□ -0.14
CLN3-255ENST00000637100 HOXB9P17482 250 aaPredicted RBP14.15□□□□□ -0.14
CLN3-255ENST00000637100 BGNP21810 368 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 RPS5P46782 204 aaKnown RBP14.15□□□□□ -0.14
CLN3-255ENST00000637100 NME5P56597 212 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 MRPS11P82912 194 aaKnown RBP14.15□□□□□ -0.14
CLN3-255ENST00000637100 DAG1Q14118 895 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 FXNQ16595 210 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 ELFN2Q5R3F8 820 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 WDR93Q6P2C0 686 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 MDP1Q86V88 176 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 TAAR8Q969N4 342 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 SNX18Q96RF0 628 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 MS4A5Q9H3V2 200 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 ZNF224Q9NZL3 707 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 CMAHPQ9Y471 501 aa14.15□□□□□ -0.14
CLN3-255ENST00000637100 MS4A18H0YCH9 400 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 AIM2O14862 343 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 HDAC3O15379 428 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 SNNO75324 88 aaPredicted RBP14.14□□□□□ -0.15
CLN3-255ENST00000637100 VENTXO95231 258 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 ADRA2AP08913 450 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 IFNGR1P15260 489 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 NCF2P19878 526 aaPredicted RBP14.14□□□□□ -0.15
CLN3-255ENST00000637100 CFPP27918 469 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 GLRXP35754 106 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 MS4A18Q3C1V0 323 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 RPS26P11Q5JNZ5 115 aaPredicted RBP14.14□□□□□ -0.15
CLN3-255ENST00000637100 PHYHD1Q5SRE7 291 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 H1FNTQ75WM6 255 aaPredicted RBP14.14□□□□□ -0.15
CLN3-255ENST00000637100 C20orf196Q8IYI0 205 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 GPR137CQ8N3F9 429 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.14□□□□□ -0.15
CLN3-255ENST00000637100 VPS33AQ96AX1 596 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 SLC25A36Q96CQ1 311 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 MRPL37Q9BZE1 423 aaKnown RBP14.14□□□□□ -0.15
CLN3-255ENST00000637100 WDR55Q9H6Y2 383 aaPredicted RBP14.14□□□□□ -0.15
CLN3-255ENST00000637100 A4GALTQ9NPC4 353 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 SDR39U1Q9NRG7 319 aaPredicted RBP14.14□□□□□ -0.15
CLN3-255ENST00000637100 SPEF1Q9Y4P9 236 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 GMEB1Q9Y692 573 aa14.14□□□□□ -0.15
CLN3-255ENST00000637100 LYNX1G3V0Z9 82 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 M0R082 166 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 WIPF1O43516 503 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 SLC22A3O75751 556 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 LYNX1P0DP58 116 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 IDO1P14902 403 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 ETS2P15036 469 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 EPHA3P29320 983 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 GRPRP30550 384 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 SRP14P37108 136 aaKnown RBP14.13□□□□□ -0.15
CLN3-255ENST00000637100 CRATP43155 626 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 RUNX1T1Q06455 604 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 SNTB2Q13425 540 aaKnown RBP14.13□□□□□ -0.15
CLN3-255ENST00000637100 GTDC1Q4AE62 458 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 ZNF311Q5JNZ3 666 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 ZNF417Q8TAU3 575 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 SLC38A4Q969I6 547 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 ZNF587Q96SQ5 575 aaPredicted RBP14.13□□□□□ -0.15
CLN3-255ENST00000637100 ZBTB18Q99592 522 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 ZIM2Q9NZV7 527 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 METRNQ9UJH8 293 aa14.13□□□□□ -0.15
CLN3-255ENST00000637100 TRPC5OSA6NMA1 111 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 HPRP00739 348 aa14.12□□□□□ -0.15
CLN3-255ENST00000637100 ACHEP22303 614 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms