RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 KRR1Q13601 381 aaKnown RBP15.18■□□□□ 0.02
CLN3-252ENST00000636907 SPHARQ15513 63 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.18■□□□□ 0.02
CLN3-252ENST00000636907 GPR139Q6DWJ6 353 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 LINC00696Q6ZRV3 163 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 P2RY8Q86VZ1 359 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 GALNT16Q8N428 558 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 SCAIQ8N9R8 606 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 OR51L1Q8NGJ5 315 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 SIGLEC12Q96PQ1 595 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 UTP23Q9BRU9 249 aaKnown RBP15.18■□□□□ 0.02
CLN3-252ENST00000636907 ZNF649Q9BS31 505 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 ASB6Q9NWX5 421 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 CHCHD3Q9NX63 227 aaKnown RBP15.18■□□□□ 0.02
CLN3-252ENST00000636907 HAO2Q9NYQ3 351 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 TMEM129A0AVI4 362 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 LRRC3CA6NJW4 275 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 MS4A18H0YCH9 400 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 GABARAPO95166 117 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 WDPCPO95876 746 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 MRPL3P09001 348 aaKnown RBP15.17■□□□□ 0.02
CLN3-252ENST00000636907 PRKAR1AP10644 381 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 SPI1P17947 270 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 WT1P19544 449 aaPredicted RBP15.17■□□□□ 0.02
CLN3-252ENST00000636907 SFTPDP35247 375 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 CTF1Q16619 201 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 MS4A18Q3C1V0 323 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 RAET1LQ5VY80 246 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 LHFPL3Q86UP9 236 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 KDM8Q8N371 416 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 TMEM99Q8N816 258 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 SLC25A43Q8WUT9 341 aaPredicted RBP15.17■□□□□ 0.02
CLN3-252ENST00000636907 ZNRF4Q8WWF5 429 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 OPALINQ96PE5 141 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 OR5B2Q96R09 309 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 JAM3Q9BX67 310 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 ADGRL4Q9HBW9 690 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 ALKBH4Q9NXW9 302 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 PLA2G3Q9NZ20 509 aa15.17■□□□□ 0.02
CLN3-252ENST00000636907 CEP250Q9BV73 2442 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 A0A1W2PNR3 127 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 OR2M5A3KFT3 312 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 PINLYPA6NC86 204 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 TRIM64BA6NI03 449 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 H7C1C5 153 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 FZD7O75084 574 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 SBK2P0C263 348 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 CNR1P21554 472 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 SRD5A2P31213 254 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 CD79BP40259 229 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 LCN6P62502 163 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 ZP4Q12836 540 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 AQP6Q13520 282 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 ACKR1Q16570 336 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 TSTQ16762 297 aaKnown RBP15.16■□□□□ 0.02
CLN3-252ENST00000636907 OR2G6Q5TZ20 316 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 H1FNTQ75WM6 255 aaPredicted RBP15.16■□□□□ 0.02
CLN3-252ENST00000636907 EXD3Q8N9H8 876 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 THAP4Q8WY91 577 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 ZMYND19Q96E35 227 aaPredicted RBP15.16■□□□□ 0.02
CLN3-252ENST00000636907 TSC22D3Q99576 134 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 CHST11Q9NPF2 352 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 RPRD1BQ9NQG5 326 aaKnown RBP15.16■□□□□ 0.02
CLN3-252ENST00000636907 ERVK13-1Q9NX77 482 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 A0A1W2PPW3 197 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 A6NL46 340 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 C12orf71A8MTZ7 269 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 AKR7A3O95154 331 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 IGHMP01871 453 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 RFPL3SP0C7P2 107 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 ZNF17P17021 662 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 FKBP2P26885 142 aaKnown RBP15.16■□□□□ 0.02
CLN3-252ENST00000636907 RGS6P49758 472 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 CLK1P49759 484 aaKnown RBP15.16■□□□□ 0.02
CLN3-252ENST00000636907 SLC25A1P53007 311 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 WNT4P56705 351 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 RPL27P61353 136 aaKnown RBP15.16■□□□□ 0.02
CLN3-252ENST00000636907 TLE3Q04726 772 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 LGALS3BPQ08380 585 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 PUDPQ08623 228 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 C1DQ13901 141 aaKnown RBP15.16■□□□□ 0.02
CLN3-252ENST00000636907 TOMM20Q15388 145 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 OR1C1Q15619 314 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 TMEM176BQ3YBM2 270 aaPredicted RBP15.16■□□□□ 0.02
CLN3-252ENST00000636907 ALDH16A1Q8IZ83 802 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 ARIH2OSQ8N7S6 290 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 ZNF519Q8TB69 540 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 NXPE2Q96DL1 559 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 RACGAP1Q9H0H5 632 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 TXNIPQ9H3M7 391 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 CXorf56Q9H5V9 222 aa15.16■□□□□ 0.02
CLN3-252ENST00000636907 MED13Q9UHV7 2174 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 ARHGEF9O43307 516 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 SCG5P05408 212 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 HLA-DOBP13765 273 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 ACVR1BP36896 505 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 DIO1P49895 249 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 RRADP55042 308 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 CLN3Q13286 438 aa15.15■□□□□ 0.02
CLN3-252ENST00000636907 PON3Q15166 354 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms