RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 OSTF1Q92882 214 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 RADILQ96JH8 1075 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 JSRP1Q96MG2 331 aaPredicted RBP13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 MEPEQ9NQ76 525 aaPredicted RBP13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 ATPIF1Q9UII2 106 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 APC2O95996 2303 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 SLC22A23A1A5C7 686 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 SLC19A2O60779 497 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 PLGP00747 810 aaPredicted RBP13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 DBIP07108 87 aaKnown RBP13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 PSMB10P40306 273 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 TCTE1Q5JU00 501 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 CD276Q5ZPR3 534 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 MBOAT2Q6ZWT7 520 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 SYT13Q7L8C5 426 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 HDDC2Q7Z4H3 204 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 FAM26EQ8N5C1 309 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 ARHGAP9Q9BRR9 750 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 SEMA6CQ9H3T2 930 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 SRA1Q9HD15 236 aaKnown RBP13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 SERTAD3Q9UJW9 196 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 IER3IP1Q9Y5U9 82 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 E9PI62 339 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 C11orf98E9PRG8 122 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 FOXS1O43638 330 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 DUX1O43812 170 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 ZGLP1P0C6A0 271 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 NID1P14543 1247 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 ERVK-25P63136 954 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 DUSP8Q13202 625 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 LINC00518Q8N0U6 118 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 BOLLQ8N9W6 283 aaKnown RBP13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 METTL21AQ8WXB1 218 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 ACAD8Q9UKU7 415 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 PCOLCE2Q9UKZ9 415 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 FKBP7Q9Y680 259 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 MPDZO75970 2070 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 CDHR4A6H8M9 788 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 CDC40O60508 579 aaKnown RBP eCLIP13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 LPLP06858 475 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 TBXA2RP21731 343 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 PRKAR1BP31321 381 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 ZNF620Q6ZNG0 422 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 TRMT10AQ8TBZ6 339 aaKnown RBP13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 NT5CQ8TCD5 201 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 HS6ST2Q96MM7 605 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 OR2M2Q96R28 347 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 ARHGDIGQ99819 225 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 MRPL39Q9NYK5 338 aaKnown RBP13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 COPS3Q9UNS2 423 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 DOK2O60496 412 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 RAD1O60671 282 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 HLA-DQA2P01906 255 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 ZP3P21754 424 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 CD1CP29017 333 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 DMWDQ09019 674 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 SHEQ5VZ18 495 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 KDM8Q8N371 416 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 RFLNBQ8N5W9 214 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 OR2T4Q8NH00 348 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 NARS2Q96I59 477 aaKnown RBP13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 NKX3-1Q99801 234 aaPredicted RBP13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 SEC22CQ9BRL7 303 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 Q9N2J8 555 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 ENTPD2Q9Y5L3 495 aa13.25□□□□□ -0.29
SHROOM1-208ENST00000617339 TFP02787 698 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 OR12D2P58182 307 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 SLC25A35Q3KQZ1 300 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 KIRREL2Q6UWL6 708 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 MED25Q71SY5 747 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 SAMD14Q8IZD0 417 aaPredicted RBP13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 SMPDL3BQ92485 455 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 OR10A5Q9H207 317 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 PFDN2Q9UHV9 154 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 POMT2Q9UKY4 750 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 SURF4O15260 269 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 ANKRD34CP0C6C1 535 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 AFF3P51826 1226 aaKnown RBP13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 ZP1P60852 638 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 BIKQ13323 160 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 SLC25A25Q6KCM7 469 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 Q6ZTK2 550 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 KLHL36Q8N4N3 616 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 NMNAT3Q96T66 252 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 ORAI3Q9BRQ5 295 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 ZNF416Q9BWM5 594 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 ZNF436Q9C0F3 470 aaPredicted RBP13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 PCDHB16Q9NRJ7 776 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 MGAT4CQ9UBM8 478 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 SCP2D1Q9UJQ7 156 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 NUBP2Q9Y5Y2 271 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 ARID1AO14497 2285 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 C7orf66A4D0T2 115 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 FAM86C2PA6NEL3 165 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 ZNF593O00488 134 aaPredicted RBP13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 PDCD5O14737 125 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 GDF9O60383 454 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 NGFRP08138 427 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 SMIM10L1P0DMW3 83 aa13.24□□□□□ -0.29
SHROOM1-208ENST00000617339 IL12BP29460 328 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms