RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 NHLRC1Q6VVB1 395 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 LINC00114Q6XXX2 140 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 SNX32Q86XE0 403 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 TMEM123Q8N131 208 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 C10orf105Q8TEF2 133 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 FAM168AQ92567 244 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 TAAR8Q969N4 342 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 DNAJA3Q96EY1 480 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 KCNS3Q9BQ31 491 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 NELFAQ9H3P2 528 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 VIPAS39Q9H9C1 493 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 TMEM27Q9HBJ8 222 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 CA10Q9NS85 328 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 MRPL39Q9NYK5 338 aaKnown RBP12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 SELENONQ9NZV5 590 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 SLAMF8Q9P0V8 285 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 KLHL14Q9P2G3 628 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 TRIM33Q9UPN9 1127 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 NOX1Q9Y5S8 564 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 FKBP7Q9Y680 259 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 ATP23Q9Y6H3 246 aa12.63□□□□□ -0.39
SMARCE1-216ENST00000580419 IGHV4-30-2A0A087WSY4 118 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 A0A1W2PR80 420 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 ZNF99A8MXY4 864 aaPredicted RBP12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 TRAF3IP2O43734 574 aaPredicted RBP12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 MFN2O95140 757 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 LGI1O95970 557 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 IFNA2P01563 188 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 VIMP08670 466 aaKnown RBP12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 HTR2AP28223 471 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 SERPINF1P36955 418 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 RPS5P46782 204 aaKnown RBP12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 PPOXP50336 477 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 ROR2Q01974 943 aaKnown RBP12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 NAAAQ02083 359 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 SCARB2Q14108 478 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 TMEM249Q2WGJ8 235 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 HIKESHIQ53FT3 197 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 RUNDC3AQ59EK9 446 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 PODNL1Q6PEZ8 512 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 LINGO2Q7L985 606 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 PXKQ7Z7A4 578 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 RANBP3LQ86VV4 465 aaPredicted RBP12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 C11orf65Q8NCR3 313 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 ZNF540Q8NDQ6 660 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 NFKBIDQ8NI38 313 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 ALKBH3Q96Q83 286 aaPredicted RBP12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 EBF4Q9BQW3 602 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 CPPED1Q9BRF8 314 aaPredicted RBP12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 PCDHAC1Q9H158 963 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 PLK3Q9H4B4 646 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 ZNF385DQ9H6B1 395 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 LEF1Q9UJU2 399 aaPredicted RBP12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 CDC42EP3Q9UKI2 254 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 ADAM21Q9UKJ8 722 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 FBXL3Q9UKT7 428 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 MOKQ9UQ07 419 aa12.62□□□□□ -0.39
SMARCE1-216ENST00000580419 A8MV72 311 aaPredicted RBP12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 VWC2LB2RUY7 222 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 ATP6V1G2-DDX39BF2Z307 99 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 M0R082 166 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 NR5A2O00482 541 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 ENTPD5O75356 428 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 UPK3AO75631 287 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 EVX1P49640 407 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 CLDN17P56750 224 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 NCALDP61601 193 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 SNRPD2P62316 118 aaKnown RBP12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 C1DQ13901 141 aaKnown RBP12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 C6orf52Q5T4I8 152 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 C9orf135Q5VTT2 229 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 ARMC8Q8IUR7 673 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 GPR137CQ8N3F9 429 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 ZNF417Q8TAU3 575 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 CKAP2Q8WWK9 683 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 RASSF5Q8WWW0 418 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 SLC25A36Q96CQ1 311 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 MAGEB18Q96M61 343 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 ANKRD27Q96NW4 1050 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 OR2M2Q96R28 347 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 ZNF587Q96SQ5 575 aaPredicted RBP12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 SLC19A3Q9BZV2 496 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 GPR35Q9HC97 309 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 INTS9Q9NV88 658 aaKnown RBP12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 LPAR3Q9UBY5 353 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 ANGPT4Q9Y264 503 aa12.61□□□□□ -0.39
SMARCE1-216ENST00000580419 LOC390937A0A1W2PQ73 354 aa12.6□□□□□ -0.39
SMARCE1-216ENST00000580419 KIAA1324LA8MWY0 1029 aaPredicted RBP12.6□□□□□ -0.39
SMARCE1-216ENST00000580419 MS4A18H0YCH9 400 aa12.6□□□□□ -0.39
SMARCE1-216ENST00000580419 MGRN1O60291 552 aa12.6□□□□□ -0.39
SMARCE1-216ENST00000580419 TPST1O60507 370 aa12.6□□□□□ -0.39
SMARCE1-216ENST00000580419 NPPAP01160 153 aa12.6□□□□□ -0.39
SMARCE1-216ENST00000580419 IGF2P01344 180 aa12.6□□□□□ -0.39
SMARCE1-216ENST00000580419 CECR9P0C854 216 aa12.6□□□□□ -0.39
SMARCE1-216ENST00000580419 GRPRP30550 384 aa12.6□□□□□ -0.39
SMARCE1-216ENST00000580419 RGS8P57771 180 aaPredicted RBP12.6□□□□□ -0.39
SMARCE1-216ENST00000580419 OR1Q1Q15612 314 aa12.6□□□□□ -0.39
SMARCE1-216ENST00000580419 MS4A18Q3C1V0 323 aa12.6□□□□□ -0.39
SMARCE1-216ENST00000580419 AGKQ53H12 422 aa12.6□□□□□ -0.39
SMARCE1-216ENST00000580419 PATL1Q86TB9 770 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms