RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 GGNQ86UU5 652 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 CPOQ8IVL8 374 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 SLC37A3Q8NCC5 494 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 ZNF540Q8NDQ6 660 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 OR4K13Q8NH42 304 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 OR2V1Q8NHB1 315 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 GGHQ92820 318 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 RFKQ969G6 155 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 ABTB1Q969K4 478 aaPredicted RBP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 ZHX1-C8orf76Q96EF9 292 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 ADGRG7Q96K78 797 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 Q96M85 177 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 TSPAN32Q96QS1 320 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 MFRPQ9BY79 579 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 MRPS26Q9BYN8 205 aaKnown RBP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 DEFB127Q9H1M4 99 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 SLC6A15Q9H2J7 730 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 TXNIPQ9H3M7 391 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 DUSP21Q9H596 190 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 CCNB1IP1Q9NPC3 277 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 TIGARQ9NQ88 270 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 HINT3Q9NQE9 182 aaKnown RBP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 ZNF346Q9UL40 294 aaKnown RBP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 ASPMQ8IZT6 3477 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 TEX13CA0A0J9YWL9 993 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 LOC102725191A0A1B0GVB3 256 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 NPIPB13A6NJU9 1138 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 CLCA1A8K7I4 914 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 NPIPB4C9JG80 1138 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 TFECO14948 347 aaPredicted RBP12.26□□□□□ -0.45
CCDC40-209ENST00000573474 MRPS14O60783 128 aaKnown RBP12.26□□□□□ -0.45
CCDC40-209ENST00000573474 ACTL6AO96019 429 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 SMIM18P0DKX4 95 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 ZNF24P17028 368 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 HOXD11P31277 338 aaPredicted RBP12.26□□□□□ -0.45
CCDC40-209ENST00000573474 LHX2P50458 406 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 P2RY4P51582 365 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 CDH15P55291 814 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 CXADRP78310 365 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 SLC35A2P78381 396 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 H3F3AP84243 136 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 PMP22Q01453 160 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 CRMP1Q14194 572 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 ACKR1Q16570 336 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 TMEM225Q6GV28 225 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 PLBD1Q6P4A8 553 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 ZNF773Q6PK81 442 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 TRILQ7L0X0 811 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 JAZF1Q86VZ6 243 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 GID4Q8IVV7 300 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 KDM8Q8N371 416 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 ARIH2OSQ8N7S6 290 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 RBMXL3Q8N7X1 1067 aaKnown RBP12.26□□□□□ -0.45
CCDC40-209ENST00000573474 LSM14AQ8ND56 463 aaKnown RBP12.26□□□□□ -0.45
CCDC40-209ENST00000573474 NPEPL1Q8NDH3 523 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 NEIL3Q8TAT5 605 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 ZCCHC14Q8WYQ9 949 aaKnown RBP12.26□□□□□ -0.45
CCDC40-209ENST00000573474 EXTL1Q92935 676 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 PTP4A1Q93096 173 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 MYDGFQ969H8 173 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 OTULINQ96BN8 352 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 RASD2Q96D21 266 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 ABHD17AQ96GS6 310 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 OXGR1Q96P68 337 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 LDAHQ9H6V9 325 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 AMBNQ9NP70 447 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 FKBP14Q9NWM8 211 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 CNOT2Q9NZN8 540 aaKnown RBP12.26□□□□□ -0.45
CCDC40-209ENST00000573474 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.26□□□□□ -0.45
CCDC40-209ENST00000573474 RASD1Q9Y272 281 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 NOX1Q9Y5S8 564 aa12.26□□□□□ -0.45
CCDC40-209ENST00000573474 NCKAP5O14513 1909 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 ZFHX4Q86UP3 3567 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 TRGV5A0A0B4J1U4 118 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 FAM183AA6NL82 134 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 NPIPA5E9PKD4 350 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 K7EM74 188 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 SERPINI2O75830 405 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 VAMP5O95183 116 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 PLGP00747 810 aaPredicted RBP12.25□□□□□ -0.45
CCDC40-209ENST00000573474 PIPP12273 146 aaPredicted RBP12.25□□□□□ -0.45
CCDC40-209ENST00000573474 HTR1FP30939 366 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 ACVR1BP36896 505 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 CDKN2AP42771 156 aaKnown RBP12.25□□□□□ -0.45
CCDC40-209ENST00000573474 SLC15A1P46059 708 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 DAP3P51398 398 aaKnown RBP12.25□□□□□ -0.45
CCDC40-209ENST00000573474 SUCLG1P53597 346 aaKnown RBP12.25□□□□□ -0.45
CCDC40-209ENST00000573474 TUBA4AP68366 448 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 HSF1Q00613 529 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 KRR1Q13601 381 aaKnown RBP12.25□□□□□ -0.45
CCDC40-209ENST00000573474 APOFQ13790 326 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 BLMHQ13867 455 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 FAM205BPQ63HN1 556 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 RPUSD3Q6P087 351 aaKnown RBP12.25□□□□□ -0.45
CCDC40-209ENST00000573474 MEPCEQ7L2J0 689 aaKnown RBP12.25□□□□□ -0.45
CCDC40-209ENST00000573474 UEVLDQ8IX04 471 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 UBQLNLQ8IYU4 475 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 MEIOBQ8N635 442 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 CYB561A3Q8NBI2 242 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 SDR9C7Q8NEX9 313 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms