RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 OR6C65A6NJZ3 312 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 RPL36A-HNRNPH2H7BZ11 118 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 M0QX08 132 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 ANGPT2O15123 496 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 SLC43A1O75387 559 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 SERPINB7O75635 380 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 BGLAPP02818 100 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 THY1P04216 161 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 HLA-DOBP13765 273 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 APOBEC3AP31941 199 aaPredicted RBP9.43□□□□□ -0.9
VPS39-208ENST00000564994 CDH12P55289 794 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 NCALDP61601 193 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 ARF1P84077 181 aaKnown RBP9.43□□□□□ -0.9
VPS39-208ENST00000564994 NPTX1Q15818 432 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 MST1LQ2TV78 715 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 PHYHD1Q5SRE7 291 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 HMBOX1Q6NT76 420 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 C5orf46Q6UWT4 87 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 NHLRC1Q6VVB1 395 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 NET1Q7Z628 596 aaPredicted RBP9.43□□□□□ -0.9
VPS39-208ENST00000564994 MYPOPQ86VE0 399 aaPredicted RBP9.43□□□□□ -0.9
VPS39-208ENST00000564994 TSPYL5Q86VY4 417 aaPredicted RBP9.43□□□□□ -0.9
VPS39-208ENST00000564994 TMEM123Q8N131 208 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 C11orf65Q8NCR3 313 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 ADPRHL1Q8NDY3 354 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 OR10H5Q8NGA6 315 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 OR4D11Q8NGI4 311 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 RNF217Q8TC41 542 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 MAGEE2Q8TD90 523 aaPredicted RBP9.43□□□□□ -0.9
VPS39-208ENST00000564994 ADAD1Q96M93 576 aaKnown RBP9.43□□□□□ -0.9
VPS39-208ENST00000564994 MOGAT1Q96PD6 335 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 SLC38A2Q96QD8 506 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 OR2M2Q96R28 347 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 ARHGDIGQ99819 225 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 KAT8Q9H7Z6 458 aaKnown RBP9.43□□□□□ -0.9
VPS39-208ENST00000564994 FKRPQ9H9S5 495 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 TMEM27Q9HBJ8 222 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 GPR35Q9HC97 309 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 CRNNQ9UBG3 495 aaPredicted RBP9.43□□□□□ -0.9
VPS39-208ENST00000564994 ADAM21Q9UKJ8 722 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 TRIM33Q9UPN9 1127 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 ANGPT4Q9Y264 503 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 MALRD1Q5VYJ5 2156 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 KIAA1324LA8MWY0 1029 aaPredicted RBP9.42□□□□□ -0.9
VPS39-208ENST00000564994 H7C417 338 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 FBP2O00757 339 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 LY6HO94772 140 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 LYPD3O95274 346 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 IGLV1-44P01699 117 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 CECR9P0C854 216 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 CALCRP30988 508 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 GZMMP51124 257 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 NUDT6P53370 316 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 CRYBA2P53672 197 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 UBE2NP61088 152 aaKnown RBP9.42□□□□□ -0.9
VPS39-208ENST00000564994 PPP2R2BQ00005 443 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 RBBP4Q09028 425 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 C1DQ13901 141 aaKnown RBP9.42□□□□□ -0.9
VPS39-208ENST00000564994 NFYCQ13952 458 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 RAB35Q15286 201 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 CYP51A1Q16850 503 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 SWI5Q1ZZU3 235 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 CEACAM16Q2WEN9 425 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 ANKRD16Q6P6B7 361 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 LINC00114Q6XXX2 140 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 WDR88Q6ZMY6 472 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 RANBP3LQ86VV4 465 aaPredicted RBP9.42□□□□□ -0.9
VPS39-208ENST00000564994 RBM45Q8IUH3 476 aaKnown RBP9.42□□□□□ -0.9
VPS39-208ENST00000564994 ZNF525Q8N782 197 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 BHLHE22Q8NFJ8 381 aaPredicted RBP9.42□□□□□ -0.9
VPS39-208ENST00000564994 OR6T1Q8NGN1 323 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 OR6S1Q8NH40 331 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 TSPEARQ8WU66 669 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 TXNDC15Q96J42 360 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 ZNF317Q96PQ6 595 aaPredicted RBP9.42□□□□□ -0.9
VPS39-208ENST00000564994 MCHR1Q99705 422 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 TMEM43Q9BTV4 400 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 EMC6Q9BV81 110 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 CRLF2Q9HC73 371 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 ARGLU1Q9NWB6 273 aaPredicted RBP9.42□□□□□ -0.9
VPS39-208ENST00000564994 SLC13A4Q9UKG4 626 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 MXRA5Q9NR99 2828 aa9.42□□□□□ -0.9
VPS39-208ENST00000564994 FBN1P35555 2871 aaKnown RBP9.42□□□□□ -0.9
VPS39-208ENST00000564994 GPRIN2O60269 458 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 FMO6PO60774 539 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 SEC14L2O76054 403 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 IGKV3-15P01624 115 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 CELA3BP08861 270 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 HOXB1P14653 301 aaPredicted RBP9.41□□□□□ -0.9
VPS39-208ENST00000564994 NQO1P15559 274 aaKnown RBP9.41□□□□□ -0.9
VPS39-208ENST00000564994 CD247P20963 164 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 SH3BGRP55822 239 aaPredicted RBP9.41□□□□□ -0.9
VPS39-208ENST00000564994 IL1RL1Q01638 556 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 NAAAQ02083 359 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 MFSD13AQ14CX5 517 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 ENTPD8Q5MY95 495 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 SWT1Q5T5J6 900 aaKnown RBP9.41□□□□□ -0.9
VPS39-208ENST00000564994 METTL21CQ5VZV1 264 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 ZNF613Q6PF04 617 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 UEVLDQ8IX04 471 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms